GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:18:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:57097910-57097934
AGGTTGAAAATGTTCGTACCTATAACAGTA57097910TTTGCTTTCGGAGTGTTGGTTCCTGTAAATTGGACTGGAGAGACATTGGATAAGA
BOGPG56TR BOGP Brassica oleracea genomic clone BOGPG56, genomic survey sequence.
BH444710.1:319-343
TCTTATCCAATGTCTCTCCAGTCCAATTTA319CAGGAACCAACACTCCGAAAGCAAATACTGTTATAGGTACGAACATTTTCAACCT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:14280353-14280377
TCTTATCCAATGTCTCTCCAGTCCAATTTA14280353CAGGAACCAACACTCCGAAAGCAAATACTGTTATAGGTACGAACATTTTCAACCT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:14156974-14156998
TCTTATCCAATGTCTCTCCAGTCCAATTTA14156974CAGGAACCAACACTCCGAAAGCAAATACTGTTATAGGTACGAACATTTTCAACCT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:22101648-22101672
TCTTATCCAATGTCTCTCCAGTCCAATTTA22101648CAGGAACCAACACTCCGAAAGCAAATACTGTTATAGGTACGAACATTTTCAACCT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:21894531-21894555
TCTTATCCAATGTCTCTCCAGTCCAATTTA21894531CAGGAACCAACACTCCGAAAGCAAATACTGTTATAGGTACGAACATTTTCAACCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTTGCTTTCGGAGTGTTGGTTCCTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTGCTTTCGGAGTGTTGGTTCCTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.095 | 0.086 | search_plus_done; http://172.18.8.135:50400/match?q=TTTGCTTTCGGAGTGTTGGTTCCTG&k=0&no_gap=0&offset=0&limit=50
0.127 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=CAGGAACCAACACTCCGAAAGCAAA&k=0&no_gap=0&offset=0&limit=49
0.131 | 0.003 | cgi_end;

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