GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:25:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Rhinatrema bivittatum genome assembly, chromosome: 1.
LR584387.1:494888597-494888616
CTAAGTCCATATGTGTTCCAAGGGTCTTGG494888597TTTGGCAGGATTTTCTGCTTGGCACCACAGCAAATATAATATGCATGTTT
Pelobates cultripes genome assembly, chromosome: 02.
OW240913.1:93924527-93924546
TTTGTAGCACATTTGTATTTCTGAGATATC93924527TTTGGCAGGATTTTCTGCTTATATATAAGTGAGAACTAGTTCTGTAGGGA
Asterias amurensis isolate Qingdao Taiping Cape Park chromosome 7.
CP134958.1:16645139-16645158
CTTGTATCCTGCTCATTTAGCAGAAAATTA16645139TTTGGCAGGATTTTCTGCTTCAGTTGCTCTATCATAAAGACCGTAAGAAC
Agriotes lineatus genome assembly, chromosome: 6.
OW679199.1:4757406-4757425
TACAGAACGTTTGGGTCTCGTAATCGTGCT4757406TTTGGCAGGATTTTCTGCTTTATTTGTTTGCGACTAGATTGTAGCAGCGT
Trichobilharzia szidati genome assembly, chromosome: Z.
OX235279.1:28170795-28170814
CAGCTGTTTCGTCAGGCTAGTTTGGGACTC28170795TTTGGCAGGATTTTCTGCTTTATTTTTCTGTAAAACACGTGATCTTTCAC
Onychomys torridus genome assembly, chromosome: 11.
LR877198.1:36216040-36216059
AAGGAGCTTAGGCTTCTAAACAATTGAATA36216040AAGCAGAAAATCCTGCCAAACTTAACCACTGACCCCAAAGCTGTCACCTG
Onychomys leucogaster genome assembly, chromosome: 11.
OX460381.1:36226441-36226460
AAGGAGCTTAGGCTTCTAAACAATTGAATA36226441AAGCAGAAAATCCTGCCAAACTTAACCACTGACCCCAAAGCTGTCACCTG
Onychomys leucogaster genome assembly, chromosome: 11.
OX460428.1:36315670-36315689
AAGGAGCTTAGGCTTCTAAACAATTGAATA36315670AAGCAGAAAATCCTGCCAAACTTAACCACTGACCCCAAAGCTGTCACCTG
Onychomys torridus genome assembly, chromosome: 11.
OX460892.1:36216040-36216059
AAGGAGCTTAGGCTTCTAAACAATTGAATA36216040AAGCAGAAAATCCTGCCAAACTTAACCACTGACCCCAAAGCTGTCACCTG
Sarcophilus harrisii genome assembly, chromosome: 3.
LR735556.1:400738642-400738661
TACACCGTGAAAACTCCAAAAGTTACACTG400738642AAGCAGAAAATCCTGCCAAAGAACTATAGTATAATCATACTAGATATTAG
Rhinatrema bivittatum genome assembly, chromosome: 11.
LR584397.1:50527014-50527033
TATTATAATTACATGAACTGCTGTGGTGCC50527014AAGCAGAAAATCCTGCCAAAAAGACACTTGGAACTCCTATGAAATTACAT
Mobula hypostoma genome assembly, chromosome: 1.
OY992592.1:177812333-177812352
ATTGTGGCCCGGTATGGGAACAAAGCCTTT177812333AAGCAGAAAATCCTGCCAAACATGATGCCGAATTAAACTAAATTTCTTCT
Avena atlantica genome assembly, chromosome: 1A.
OU342733.1:143111395-143111414
CCAACTCAAGCTAGGAGGAACATTAGCACC143111395AAGCAGAAAATCCTGCCAAAAGAAAAGCAAACCTCCGACATGGTCGCCAA
Trichobilharzia regenti genome assembly, chromosome: Z.
OX235270.1:13840732-13840751
GTGAAAGACCACATGTTGTACAGAAGAATA13840732AAGCAGAAAATCCTGCCAAAGAGTCCCAAACTAGGCTGACAAAACAGCTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTTGGCAGGATTTTCTGCTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTGGCAGGATTTTCTGCTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.103 | 0.094 | search_plus_done; http://172.18.8.135:50400/match?q=TTTGGCAGGATTTTCTGCTT&k=0&no_gap=0&offset=0&limit=50
0.133 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=AAGCAGAAAATCCTGCCAAA&k=0&no_gap=0&offset=0&limit=45
0.138 | 0.006 | cgi_end;

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