GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 14:34:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:30778407-30778426
AGGGACAACATTGTAGATGTATAGAGATAT30778407TTTGGTATCCTGCCTCTTCGAGACACCACCACCAAACGACGCCTCCTCTC
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:34487271-34487290
AGGGACAACATTGTAGATGTATAGAGATAT34487271TTTGGTATCCTGCCTCTTCGAGACACCACCACCAAACGACGCCTCCTCTC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A10.
HG996476.1:28007388-28007407
AGGGACAACATTGTAGATGTATAGAGATAT28007388TTTGGTATCCTGCCTCTTCGAGACACCACCACCAAACGACGCCTCCTCTC
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:31468939-31468958
AGGGACAACATTGTAGATGTATAGAGATAT31468939TTTGGTATCCTGCCTCTTCGAGACACCACCACCAAACGACGCCTCCCCTC
Ischnura elegans genome assembly, chromosome: 7.
OV121107.1:37965146-37965165
ATTTTGCAATTACCACGAAAACGGTTTTTC37965146TTTGGTATCCTGCCTCTTCGACATTTTATTTGATACTCTGGATTTTTAAG
TSA: Musa acuminata AAA Group Unigene11014_NK1 mRNA sequence.
JV433991.1:2149-2168
GAGAGGAGGCGTCGTTTGGTGGTGGTGTCT2149CGAAGAGGCAGGATACCAAAATATCTCTATACATCTACAATGTTGTCCCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTGGTATCCTGCCTCTTCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTGGTATCCTGCCTCTTCG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.178 | 0.169 | search_plus_done; http://172.18.8.135:50400/match?q=TTTGGTATCCTGCCTCTTCG&k=0&no_gap=0&offset=0&limit=50
0.265 | 0.087 | search_minus_done; http://172.18.8.135:50400/match?q=CGAAGAGGCAGGATACCAAA&k=0&no_gap=0&offset=0&limit=45
0.266 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).