GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 13:13:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KS24002H04 KS24 Capsicum annuum cDNA, mRNA sequence.
GD118154.1:155-175
AATATACCAACACATTACATAATCTTTTTT155TTTGGTCATTGTTCACCTTCAATATCTGTTGCTGAAGACATGTAACTCATA
KS25018I20 KS25 Capsicum annuum cDNA, mRNA sequence.
GD125480.1:186-206
AATATACCAACACATTACATAATCTTTTTT186TTTGGTCATTGTTCACCTTCAATATCTGTTGCTGAAGACATGTAACTCATA
VBL1_29_D12_E001.g1 Normalized cDNA library from cotyledon and young leaves of peanut Arachis hypogaea cDNA, mRNA sequence.
GO262739.1:161-181
GAGAACAGATCAGAGCACTAATTAATATAA161TTTGGTCATTGTTCACCTTCAATAATTCTCATCCCATTTTCTTATTATGGA
TSA: Capsicum annuum MGMT_Contig1489, mRNA sequence.
JW051733.1:110-130
AATATACCAACACATTACATAATCTTTTTT110TTTGGTCATTGTTCACCTTCAATATCTGTTGCTGAAGACATGTAACTCATA
TSA: Capsicum annuum EJ_MegaContig_43024, mRNA sequence.
JW138158.1:103-123
AATATACCAACACATTACATAATCTTTTTT103TTTGGTCATTGTTCACCTTCAATATCTGTTGCTGAAGACATGTAACTCATA
Capsicum annuum Takanotsume DNA, chromosome 8, sequence.
AP026703.1:2935567-2935587
AATATACCAACACATTACATAATCTTTTTT2935567TTTGGTCATTGTTCACCTTCAATATCTGTTGCTGAAGACATGTAACTCATA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 8.
CP124724.1:16194237-16194257
AATATACCAACACATTACATAATCTTTTTT16194237TTTGGTCATTGTTCACCTTCAATATCTGTTGCTGAAGACATGTAACTCATA
Macrobrachium nipponense isolate FS-2020 chromosome 12.
CP062025.1:12111132-12111152
TTTCTTTCCAGTTTCAGCTTAAACTTATAA12111132TTTGGTCATTGTTCACCTTCACTTCTAATTCTCTCCTCTCACAAGCCTTTT
Arachis hypogaea cultivar Shitouqi chromosome B04.
CP030996.1:29520524-29520544
ACCATAATAAGAAAATGGGATGAGAATTAT29520524TGAAGGTGAACAATGACCAAATTATATTAATTAGTGCTCTGATCTGTTCTC
Arachis ipaensis cultivar K30076 chromosome 04.
CP049895.1:29293167-29293187
ACCATAATAAGAAAATGGGATGAGAATTAT29293167TGAAGGTGAACAATGACCAAATTATATTAATTAGTGCTCTGATCTGTTCTC
Agriotes lineatus genome assembly, chromosome: 1.
OW679194.1:46388232-46388252
CTTTAAAAGAGTCAGATTCCAATAAATTTA46388232TGAAGGTGAACAATGACCAAACAAAATTAATGTTGACAAAAAATCTTTATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTGGTCATTGTTCACCTTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTGGTCATTGTTCACCTTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.405 | 0.396 | search_plus_done; http://172.18.8.135:50400/match?q=TTTGGTCATTGTTCACCTTCA&k=0&no_gap=0&offset=0&limit=50
0.469 | 0.065 | search_minus_done; http://172.18.8.135:50400/match?q=TGAAGGTGAACAATGACCAAA&k=0&no_gap=0&offset=0&limit=42
0.472 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).