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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:26:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GR__Eb0035A17.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0035A17 3', mRNA sequence.
CO105069.1:622-642
CTGGTTTTTATGGATACTTTATTGGGTTTC622TTTGTTTCTAATTGGGCATGGTTTAAATAACTTTANAATTGCGAGTGCTTT
A10_P-13_070 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX165352.1:220-240
CTGGTTTTTATGGATACTTTATTGGGTTTC220TTTGTTTCTAATTGGGCATGGTTTAATAAACTTTAAAATTGCGAGTGCTTT
A10_P-13_070 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequence.
EY196992.1:220-240
CTGGTTTTTATGGATACTTTATTGGGTTTC220TTTGTTTCTAATTGGGCATGGTTTAATAAACTTTAAAATTGCGAGTGCTTT
EST009676 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 43-K21 5', mRNA sequence.
GR716476.1:1-21
1TTTGTTTCTAATTGGGCATGGTTTAATAAAGAAACCCAATAAAGTATCCAT
EST009676 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 43-K21 5', mRNA sequence.
GR716476.1:148-168
AGACAAAATGGCATTACTTTATTGGGTTTC148TTTGTTTCTAATTGGGCATGGTTTAATAAACTTTAAAATTGCGAGTGCTTT
E10-061E10 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK798661.1:239-259
CTGGTTTTTATGGATACTTTATTGGGTTTC239TTTGTTTCTAATTGGGCATGGTTTAATAAACTTTAAAATTGCGAGTGCTTT
Gossypium turneri isolate D10-2 chromosome D10_07.
CP032577.1:46134502-46134522
CTGGTTTTTATGGATACTTTATTGGGTTTC46134502TTTGTTTCTAATTGGGCATGGTTTAATAAACTTTAAAATTGCGAGTGCTTT
Gossypium herbaceum isolate GPA1alz chromosome 7.
CP106706.1:92472796-92472816
CTGGTTTTTATGGACACTTTATTGGGTTTC92472796TTTGTTTCTAATTGGGCATGGTTTAATAAACTTTAAAATTGCGAGTCCTTT
GR__Eb0035A19.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0035A19 5', mRNA sequence.
CO105072.1:680-700
AAAGCACTCGCAATTTTAAAGTTTATTAAA680CCATGCCCAATTAGAAACAAAGAAACCCAATAAAGTATCCATAAAAACCAG
Gossypium raimondii isolate D5-4 chromosome D5_07.
CP032559.1:7717770-7717790
AAAGCACTCGCAATTTTAAAGTTTATTAAA7717770CCATGCCCAATTAGAAACAAAGAAACCCAATAAAGTATCCATAAAAACCAG
Gossypium herbaceum isolate Zhongcao1 chromosome 7.
CP106693.1:9387396-9387416
AAAGGACTCGCAATTTTAAAGTTTATTAAA9387396CCATGCCCAATTAGAAACAAAGAAACCCAATAAAGTGTCCATAAAAACCAG
Gossypium rotundifolium isolate GPK201 chromosome 7.
CP106728.1:14259605-14259625
AAAGCACTCGCAATTTTAAAGTTTATTAAA14259605CCATGCCCAATTAGAAACAAAGAAACCCAATAAAGTATCCATAAAAACCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTGTTTCTAATTGGGCATGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTGTTTCTAATTGGGCATGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.759 | 0.751 | search_plus_done; http://172.18.8.135:50400/match?q=TTTGTTTCTAATTGGGCATGG&k=0&no_gap=0&offset=0&limit=50
0.891 | 0.132 | search_minus_done; http://172.18.8.135:50400/match?q=CCATGCCCAATTAGAAACAAA&k=0&no_gap=0&offset=0&limit=42
0.894 | 0.003 | cgi_end;

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