GGGenome Help | Japanese

Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 14:25:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Silene latifolia Sl_contig8890 mRNA sequence.
JO785410.1:1511-1530
GATTGCGCCCAGTTGTATATCTTGGTGTGA1511TTTTCGTGTTTATGGTTGCGTTCTTGTTCATGGCCTGCATTGGCCTATGG
Lotus japonicus genomic DNA, chromosome 1, clone: LjT45M12, TM0378b.
AP006685.1:60834-60853
ATCAAAAATTGTTCCGCGTTTAGGATATGT60834TTTTCGTGTTTATGGTTGCGATTTTCAACTATTGTGAAAAGCAAAAAATG
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:124798030-124798049
CATTTTTTGCTTTTCACAATAGTTGAAAAT124798030CGCAACCATAAACACGAAAAACATATCCTAAACGCGGAACAATTTTTGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTTTCGTGTTTATGGTTGCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTTCGTGTTTATGGTTGCG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.101 | 0.092 | search_plus_done; http://172.18.8.135:50400/match?q=TTTTCGTGTTTATGGTTGCG&k=0&no_gap=0&offset=0&limit=50
0.117 | 0.015 | search_minus_done; http://172.18.8.135:50400/match?q=CGCAACCATAAACACGAAAA&k=0&no_gap=0&offset=0&limit=48
0.118 | 0.001 | cgi_end;

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