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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 02:19:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrH023M11F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH023M11, genomic survey sequence.
DX894414.1:420-442
TATAATAATGAACTTATGTAAAATATGATA420TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB044L16, complete sequence.
AC189359.2:14266-14288
TATAATAATGAACTTATGTCAAATATGATA14266TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
AC189433.2:76024-76046
TATAATAATGAACTTATGTAAAATATGATA76024TTTTCTAGGAATGGTCCAAACTTAAAAAATCATACATGAAAATAATATATAAG
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:16673385-16673407
TATAATAATAAACTTATGTAAAATATGATA16673385TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:44196100-44196122
TATAATAATGAACTTATGTAAAATATGATA44196100TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:8314308-8314330
TATAATAATGAACTTATGTAAAATATGATA8314308TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTTATGAC
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:35892748-35892770
TATAATAATGAACTTATGTAAAATATGATA35892748TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica napus genome assembly, chromosome: A01.
HG994355.1:29711073-29711095
TATAATAATGAACTTATGTAAAATATGATA29711073TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica napus genome assembly, chromosome: A02.
HG994356.1:16607339-16607361
TATAATAATAAACTTATGTAAAATATGATA16607339TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica napus genome assembly, chromosome: A02.
HG994356.1:31959310-31959332
TATAATAATGAACTTATGTAAAATATGATA31959310TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica napus genome assembly, chromosome: A05.
HG994359.1:32142438-32142460
TATAATAATGAACTTATGTAAAATATGATA32142438TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica napus genome assembly, chromosome: A06.
HG994360.1:38421268-38421290
TATAATAATGAACTTATGTAAAATATGATA38421268TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAATCATGAC
Brassica napus genome assembly, chromosome: C02.
HG994366.1:60216543-60216565
TATAATAATGAACTTATGTAAAATATGATA60216543TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica rapa genome, scaffold: A05.
LR031570.1:38229727-38229749
TATAATAATGAACTTATGTAAAATATGATA38229727TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica rapa genome, scaffold: A02.
LR031573.1:30172282-30172304
TATAATAATGAACTTATGTAAAATATGATA30172282TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:31103857-31103879
TATAATAATGAACTTATGTAAAATATGATA31103857TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:34909550-34909572
TATAATAATGAACTTATGTAAAATATGATA34909550TTTTCTAGGAATGGTCCAAACTTAAAAAATCACACATGAAAAGAAGTCATGAC
JBnY039J07F Brassica napus BAC library JBnY Brassica napus genomic clone JBnY039J07, genomic survey sequence.
DU102621.1:523-545
GTCATGACTTCTTTTCATGTGTGACTTTTT523AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH048J07, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
AC241136.1:33958-33980
GTCATGACTTCTTTTCATGTGTGATTTTTT33958AAGTTTGGACCATTCCTAGAAAATATCATATTTGACATAAGTTCATTATTATA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:34937034-34937056
GTCATGACTTCTTTTCATGTGTGATTTTTT34937034AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:3469086-3469108
CTTATGACTTCTTTTCATGTGTGATTTTTT3469086AAGTTTGGACCATTCCTAGAAAATATTATATTTTACATAAGTTCATTATTATA
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:2148172-2148194
GTCATGACTTCTTTTCATGTGTGATTTTTT2148172AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:43422569-43422591
GTCATGACTTCTTTTCATGTGTGATTTTTT43422569AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:21172936-21172958
GTCATGACTTCTTTTCATGTATGATTTTTT21172936AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica napus genome assembly, chromosome: A05.
HG994359.1:39525043-39525065
GTCATGACTTCTTTTCATGTGTGATTTTTT39525043AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:18144939-18144961
GTCATAACTTCTTTTCATGTGTGATTTTTT18144939AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:12012098-12012120
GTCATGACTTCTTTTCATGTGTGACTTTTT12012098AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica rapa genome, scaffold: A01.
LR031571.1:26360085-26360107
GTCATGACTTCTTTTCATGTATGATTTTTT26360085AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica rapa genome, scaffold: A04.
LR031576.1:562510-562532
GTCATGACTTCTTTTCATGTGTGATTTTTT562510AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:26880670-26880692
GTCATGACTTCTTTTCATGTATGATTTTTT26880670AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:583911-583933
GTCATGACTTCTTTTCATGTGTGATTTTTT583911AAGTTTGGACCATTCCTAGAAAATATCATATTTTACATAAGTTCATTATTATA

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