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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 11:41:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

CS00-C1-102-107-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY672317.1:385-405
GAATTTTGAAAATTCATTTTGTCTAAATGA385TTTTGAACAATCGGCTAATGGTAGATATTGTACCAACTTTTTATATGTAAT
Oryza sativa indica subgroup Inn Ma Yebaw DNA, chromosome: 7.
AP027391.1:4407763-4407783
ATGGAATAATTCCAGCCGATGTCGATAGGG4407763TTTTGAACAATCGGCTAATGGTAATGTAATTAAACCATAATAATATCCAGT
Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
CP012615.1:3957084-3957104
ATGGAATAATTCCAGCCGATGTCGATAGGG3957084TTTTGAACAATCGGCTAATGGTAATGTAATTAAACCATAATAATATCCAGT
Oryza sativa Indica Group cultivar Shuhui498 chromosome 7, partial sequence.
CP018163.1:4192048-4192068
ATGGAATAATTCCAGCCGATGTCGATAGGG4192048TTTTGAACAATCGGCTAATGGTAATGTAATTAAACCATAATAATATCCAGT
Oryza sativa Indica Group cultivar Minghui 63 chromosome 7.
CP054682.1:4186519-4186539
ATGGAATAATTCCAGCCGATGTCGATAGGG4186519TTTTGAACAATCGGCTAATGGTAATGTAATTAAACCATAATAATATCCAGT
Oryza sativa Indica Group cultivar Zhenshan 97 chromosome 7.
CP056058.1:4448810-4448830
ATGGAATAATTCCAGCCGATGTCGATAGGG4448810TTTTGAACAATCGGCTAATGGTAATGTAATTAAACCATAATAATATCCAGT
Gossypium bickii isolate GPG1lz chromosome 11.
CP106711.1:74687092-74687112
GTTCAAAAGAAGTTACCCTTTGGCTTTGGG74687092TTTTGAACAATCGGCTAATGGTTGCCTTGGGGTTCGGCACTTGGAGAATTG
Oryza sativa indica subgroup cultivar ZH8015 chromosome 07.
CP141114.1:4231081-4231101
ATGGAATAATTCCAGCCGATGTCGATAGGG4231081TTTTGAACAATCGGCTAATGGTAATGTAATTAAACCATAATAATATCCAGT
Citrus reshni phosphoenolpyruvate carboxylase gene, partial cds.
JX630067.1:162-182
GAATTTTGAAAATTCWTTTTGTCTAAATGA162TTTTGAACAATCGGCTAATGGTAGATATTGTACCAACTTTTTATATGTAAT
Oryza sativa genome assembly, chromosome: 7.
OX637252.1:3774093-3774113
ATGGAATAATTCCAGCCGATGTCGATAGGG3774093TTTTGAACAATCGGCTAATGGTAATGTAATTAAACCATAATAATATCCAGT
Citrus sinensis genome assembly, chromosome: 2.
OY754319.1:7388328-7388348
ATTACATATAAAAAGTTGGTACAATATCTA7388328CCATTAGCCGATTGTTCAAAATCATTTAGACAAAAAGAATTTTCAAAATTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTTGAACAATCGGCTAATGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTTGAACAATCGGCTAATGG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.240 | 0.231 | search_plus_done; http://172.18.8.135:50400/match?q=TTTTGAACAATCGGCTAATGG&k=0&no_gap=0&offset=0&limit=50
0.306 | 0.066 | search_minus_done; http://172.18.8.135:50400/match?q=CCATTAGCCGATTGTTCAAAA&k=0&no_gap=0&offset=0&limit=40
0.307 | 0.001 | cgi_end;

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