GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:58:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:5639931-5639950
TGGGCCCTCTAAGGCTGCCTCAAGCAAGGC5639931TTTTGCAAGAATCCTTCTCCTGCTCTCCTCTTCCTCTTCCTCTTCCTCTT
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:7417518-7417537
AGGGCCCTCTAAGGCTGCCTCAAGCAAGGC7417518TTTTGCAAGAATCCTTCTCCTGCTCTCCTCTTCCTCTTCCTCTTCTTTAA
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:12228316-12228335
TGGGCCCTCTAAGGCTGCCTCAAGCAAGGC12228316TTTTGCAAGAATCCTTCTCCTGCTCTCCTCTTCCTCTTCTTTAACTTTGC
Melitaea cinxia genome assembly, chromosome: 16.
HG992225.1:16426282-16426301
ACTCGGTAGACCAGACGCCTTATACGGATA16426282TTTTGCAAGAATCCTTCTCCAAGAACGGTAGAGATGTAGACCTTAGTATA
Megachile ligniseca genome assembly, chromosome: 7.
OX243783.1:12957226-12957245
CTCGACAAAAATCGTGCAGACTTAACGAAC12957226TTTTGCAAGAATCCTTCTCCGGCGTAAAGTAGATTGCTCTTTTCCACGAC
Asteroscopus sphinx genome assembly, chromosome: 24.
OX453025.1:7011192-7011211
TTTCTTTGTTTACCTACGTAATCTTAATTT7011192TTTTGCAAGAATCCTTCTCCATTTTATAATTATAAAGGCAATGCAAAAAA
Xyrichtys novacula genome assembly, chromosome: 13.
OY660876.1:9272727-9272746
TGTGTGCTTATTTGGAAAAATAATGGGAGG9272727GGAGAAGGATTCTTGCAAAACGGGCTGATAATCAGTTTAGAGGCACAGTT
EST1075431 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT564791.1:403-422
AAGAGGAAGAGGAAGAGGAAGAGGAGAGCA403GGAGAAGGATTCTTGCAAAAGCCTTGCTTGAGGCAGCCTTAGAGGGCCCA
EST1085028 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT574388.1:503-522
TTAAAGAAGAGGAAGAGGAAGAGGAGAGCA503GGAGAAGGATTCTTGCAAAAGCCTTGCTTGAGGCAGCCTTAGAGGGCCCT
UFL_082_61 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES841942.1:449-468
AAGAGGAAGAGGAAGAGGAAGAGGAGAGCA449GGAGAAGGATTCTTGCAAAAGCCTTGCTTGAGGCAGCCTTAGAGGGCCCA
Gossypioides kirkii clone GKH058K14-jmr, complete sequence.
AC243092.1:11427-11446
TTAAAGAAGAGGAAGAGGAAGAGGAGAGCA11427GGAGAAGGATTCTTGCAAAAGCCTTGCTTGAGGCAGCCTTAGAGGGCCCG
Gossypioides kirkii chromosome KI_01.
CP032244.1:34064284-34064303
TTAAAGAAGAGGAAGAGGAAGAGGAGAGCA34064284GGAGAAGGATTCTTGCAAAAGCCTTGCTTGAGGCAGCCTTAGAGGGCCCG
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:51331485-51331504
TTAAAGAAGAGGAAGAGGAAGAGGAGAGCA51331485GGAGAAGGATTCTTGCAAAAGCCTTGCTTGAGGCAGCCTTAGAGGGCCCA
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:118329823-118329842
TTAAAGAAGAGGAAGAGGAAGAGGAGAGCA118329823GGAGAAGGATTCTTGCAAAAGCCTTGCTTGAGGCAGCCTTAGAGGGCCCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTTTGCAAGAATCCTTCTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTTGCAAGAATCCTTCTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.354 | 0.345 | search_plus_done; http://172.18.8.135:50400/match?q=TTTTGCAAGAATCCTTCTCC&k=0&no_gap=0&offset=0&limit=50
0.617 | 0.263 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGAAGGATTCTTGCAAAA&k=0&no_gap=0&offset=0&limit=44
0.622 | 0.005 | cgi_end;

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