GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 13:08:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Rutilus rutilus genome assembly, chromosome: 23.
OX637955.1:3476512-3476531
CCAGTTAAATAAAGACACATTCTTCATAAT3476512TTTTTCCGGCTTTTGATGTGCCACTAGATGTCAATATATGCCTGCATAAG
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:33320764-33320783
GTAATTTTTCGTTTTGCTTTCATTTATTTT33320764TTTTTCCGGCTTTTGATGTGCTTATTCTTAATAAACTGTTTGCGGTTAGC
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141986.1:34167564-34167583
GTAAATTTTCGTTTTGCTTTTATTTATTTT34167564TTTTTCCGGCTTTTGATGTGCTTATTCTTAATAAACTGTTTGCGGTTAGC
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143391.1:31223177-31223196
TTCCAGGTAATTTTTCGTTTTGCTTTTTTT31223177TTTTTCCGGCTTTTGATGTGCTTATTCTTAATAAACTGTTTGCGGTTAGC
Malus sylvestris genome assembly, chromosome: 17.
OU696519.1:33264203-33264222
GGTAATTTTTCGTTTTGCTTTTATTTATTT33264203TTTTTCCGGCTTTTGATGTGCTTATTCTTAATAAACTGTTTGCGGTTAGC
Malus domestica genome assembly, chromosome: 17.
OU696693.1:33524591-33524610
GTAAATTTTCGTTTTGCTTTTATTTATTTT33524591TTTTTCCGGCTTTTGATGTGCTTATTCTTAATAAACTGTTTGCGGTTAGC
Malus domestica genome assembly, chromosome: 17.
OU744558.1:34241360-34241379
GGTAATTTTTCGTTTTGCTTTTATTTATTT34241360TTTTTCCGGCTTTTGATGTGCTTATTCTTAATAAACTGTTTGCGGTTAGC
Malus domestica genome assembly, chromosome: 17.
OU744969.1:33249985-33250004
GTAAATTTTCGTTTTGCTTTTATTTATTTT33249985TTTTTCCGGCTTTTGATGTGCTTATTCTTAATAAACTGTTTGCGGTTAGC
Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:39025885-39025904
TTTCGGATTGGTTTTCCAGGTAATTTTTTG39025885TTTTTCCGGCTTTTGATGTGCTTATTCTTAATAAACTGTTTGCGGGTGGC
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:528203-528222
GCTAACCGCAAACAGTTTATTAAGAATAAG528203CACATCAAAAGCCGGAAAAAAAAATAAATGAAAGCAAAACGAAAAATTAC
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141943.1:610708-610727
GCTAACCGCAAAAAGTTTATTAAGAATAAG610708CACATCAAAAGCCGGAAAAAAATTACATAAAAGCAAAACGAAAAATTACC
Pyrus communis genome assembly, chromosome: 11.
OY757078.1:513873-513892
GCTAGCCGCAAACAGTTTATTAAGAATAAG513873CACATCAAAAGCCGGAAAAAAAAAAAGCAAAACGAAAAATTACCTGGAAA
Ennomos erosarius genome assembly, chromosome: 1.
OY756978.1:1328373-1328392
TCCACTATAACCAGAAAAACCACATCATAT1328373CACATCAAAAGCCGGAAAAAATCCTGTATATAATCAACATTGGCTTAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTTTTCCGGCTTTTGATGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTTTCCGGCTTTTGATGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.103 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=TTTTTCCGGCTTTTGATGTG&k=0&no_gap=0&offset=0&limit=50
0.126 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=CACATCAAAAGCCGGAAAAA&k=0&no_gap=0&offset=0&limit=41
0.129 | 0.003 | cgi_end;

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