GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 08:37:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gouania willdenowi genome assembly, chromosome: 5.
LR131993.1:2471049-2471068
TTGGCCAATGTAATAGTAAATAAAAGTATT2471049TTTTTCGGATTTCCATAGCGTGTCACCCTAGAACCAATGCATATATGTGA
Dianthus caryophyllus mRNA, clone: CES05N08, 5' end sequence.
FY384301.1:424-443
CATCATCATCGACATCGACAAACCCTAACT424CGCTATGGAAATCCGAAAAAACGCAGCAAATATTCTCCTCGAAGCTCATG
Dianthus caryophyllus mRNA, clone: CES29C09, 5' end sequence.
FY393087.1:389-408
CATCATCATCGACATCGACAAACCCTAACT389CGCTATGGAAATCCGAAAAAACGCAGCAAATATTCTCCTCGAAGCTCATG
Dianthus caryophyllus mRNA, clone: CFES08K13, 5' end sequence.
FY397064.1:400-419
CATCATCATCGACATCGACAAACCCTAACT400CGCTATGGAAATCCGAAAAAACGCAGCAAATATTCTCCTCGAAGCTCATG
Dianthus caryophyllus mRNA, clone: CFES12K14, 5' end sequence.
FY398575.1:342-361
CATCATCATCGACATCGACAAACCCTAACT342CGCTATGGAAATCCGAAAAAACGCAGCAAATATTCTCCTCGAAGCTCATG
Dianthus caryophyllus mRNA, clone: CFES25_F20, 5' end sequence.
FY403328.1:427-446
CATCATCATCGACATCGACAAACCCTAACT427CGCTATGGAAATCCGAAAAAACGCAGCAAATATTCTCCTCGAAGCTCATG
TSA: Dianthus caryophyllus mRNA, contig: CAK09.376.C1.
FX297236.1:423-442
CATCATCATCGACATCGACAAACCCTAACT423CGCTATGGAAATCCGAAAAAACGCAGCAAATATTCTCCTCGAAGCTCATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTTTTCGGATTTCCATAGCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTTTCGGATTTCCATAGCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.094 | 0.086 | search_plus_done; http://172.18.8.135:50400/match?q=TTTTTCGGATTTCCATAGCG&k=0&no_gap=0&offset=0&limit=50
0.463 | 0.369 | search_minus_done; http://172.18.8.135:50400/match?q=CGCTATGGAAATCCGAAAAA&k=0&no_gap=0&offset=0&limit=49
0.467 | 0.004 | cgi_end;

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