GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:47:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Myotis daubentonii genome assembly, chromosome: 4.
OY725363.1:92228715-92228734
GAACACCAAAGTATGTTGTGTGTCTGTTTT92228715TTTTTCTTTTGTGCCTTGCCCTGGCTCTGTGTAGCAGTGGTGTGTGCGAG
Pipistrellus nathusii genome assembly, chromosome: 19.
OY882876.1:4064969-4064988
ACAAGGAATGTCAGAAAAGTCCAACTCTGA4064969TTTTTCTTTTGTGCCTTGCCTTTGTTCTGTCTTCATGGCTCTCGTAACAG
Pipistrellus nathusii genome assembly, chromosome: 19.
OY883196.1:4093142-4093161
ACAAGGAATGTCAGAAAAGTCCAACTCTGA4093142TTTTTCTTTTGTGCCTTGCCTTTGTTCTGTCTTCATGGCTCTCGTAACAG
Rhinatrema bivittatum genome assembly, chromosome: 1.
LR584387.1:214401526-214401545
CTTAAATGTAATTGTACATCATTTGTGCTG214401526TTTTTCTTTTGTGCCTTGCCAAGAACAACTTTTATTTTTTTAATGATGTG
Barbus barbus genome assembly, chromosome: 20.
OW387187.1:25014740-25014759
ATTCTGGGTACCAAGATGTCTGTGATGAGC25014740TTTTTCTTTTGTGCCTTGCCTGTTTTAGTTGAGTTCTTAGTTATATTGCA
OGWME80TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0616M15, genomic survey sequence.
CG361668.1:543-562
TTAACTGTCAAATGAATGTACATAGGCCTA543TTTTTCTTTTGTGCCTTGCCTTCGACCGTTCGACGTTCGACCTAGTTGGT
OG5DZ35TC ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0842F22, genomic survey sequence.
CG446037.1:146-165
TTAACTGTCAAATGAATGTACATAGGCCTA146TTTTTCTTTTGTGCCTTGCCTTCGACCGTTCGACGTTCGACCTAGTTGGT
Zea mays strain B73 clone ZMMBBb0190E08, *** SEQUENCING IN PROGRESS ***, 35 unordered pieces.
AC155411.2:45895-45914
TTAACTGTCAAATGAATGTACATAGGCCTA45895TTTTTCTTTTGTGCCTTGCCTTCGACCGTTCGACGTTCGACCTAGTTGGG
Zea mays cultivar LT2357 chromosome 5.
CP116743.1:209282783-209282802
TTAACTGTCAAATGAATGTACATAGGCCTA209282783TTTTTCTTTTGTGCCTTGCCTTCGACCGTTCGACGTTCGACCTAGTTGGT
Thlaspi arvense genome assembly, chromosome: 2.
OU466858.1:61579310-61579329
ATTTCCACCCTTTTGCTTGTGTCACAGTCC61579310TTTTTCTTTTGTGCCTTGCCTTCTTTTCTTCTTTGCCTCTCTTAAAAACT
Melitaea cinxia genome assembly, chromosome: 7.
HG992216.1:3090990-3091009
TAAACATTATTGTACATTATTTCAATACTC3090990TTTTTCTTTTGTGCCTTGCCTTTGTTGCCAGGGTCTGAGTTCCGTCAACG
Mythimna ferrago genome assembly, chromosome: Z.
OU342673.1:14398785-14398804
AATACAATTTTTCAAGAAATCGTGCCTATT14398785TTTTTCTTTTGTGCCTTGCCCACGTCCATTGTTAACCTTAGATCGTATTC
Metalampra italica genome assembly, chromosome: 18.
OX452988.1:4999438-4999457
ATGACAAGATATGATATTACGTTCGAAAGT4999438TTTTTCTTTTGTGCCTTGCCTTTCATAATTTTATGTCAACGGGAAGTACC
Zootoca vivipara genome assembly, chromosome: Z.
OY735916.1:28002231-28002250
GTTCCTGCCCTCAAGCATACAGTCCGAAAA28002231GGCAAGGCACAAAAGAAAAAAGGTTTCAAAGATAGGAAGAACAGAGCAAA
MSAM226577_0748_0307 LCM-dissected maize shoot apical meristem cDNA Zea mays cDNA, mRNA sequence.
DW814585.1:125-144
ACCAACTAGGTCGAACGTCGAACGGTCGAA125GGCAAGGCACAAAAGAAAAATAGGCC
zmrsub1_0A10-012-d04.s4 zmrsub1 Zea mays cDNA 3', mRNA sequence.
EE681219.1:19-38
GAACGTCGAACGGTCGAA19GGCAAGGCACAAAAGAAAAATAGGCCTATGTACATTCATTTGACAGTTAA
OGWIL31TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0595F14, genomic survey sequence.
CC602544.1:142-161
ACCAACTAGGTCGAACGTCGAACGGTCGAA142GGCAAGGCACAAAAGAAAAATAGGCCTATGTACATTCATTTGACAGTTAA
OGOAI25TH ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0338E01, genomic survey sequence.
CC619493.1:215-234
ACCAACTAGGTCGAACGTCGAACGGTCGAA215GGCAAGGCACAAAAGAAAAATAGGCCTATGTACATTCATTTGACAGTTAA
OGWGR14TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0574C04, genomic survey sequence.
CG352288.1:399-418
ACCAACTAGGTCGAACGTCGAACGGTCGAA399GGCAAGGCACAAAAGAAAAATAGGCCTATGTACATTCATTTGACAGTTAA
OGWME80TH ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0616M15, genomic survey sequence.
CG361659.1:513-532
ACCAACTAGGTCGAACGTCGAACGGTCGAA513GGCAAGGCACAAAAGAAAAATAGGCCTATGTACATTCATTTGACAGTTAA
ZMMBLa0006O12.r ZMMBLa Zea mays genomic clone ZMMBLa0006O12 3', genomic survey sequence.
CW006185.1:316-335
ACCAACTAGGTCGAACGTCGAACGGTCGAA316GGCAAGGCACAAAAGAAAAATAGGCCTATGTACATTCATTTGACAGTTAA
Zea mays strain B73 clone ZMMBBb0187E08, *** SEQUENCING IN PROGRESS ***, 22 unordered pieces.
AC155407.2:34894-34913
ACCAACTAGGTCGAACGTCGAACGGTCGAA34894GGCAAGGCACAAAAGAAAAATAGGCCTATGTACATTCATTTGACAGTTAA
Zea mays cultivar B73 chromosome 5 clone CH201-261K24, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces.
AC204770.5:99939-99958
ACCAACTAGGTCGAACGTCGAACGGTCGAA99939GGCAAGGCACAAAAGAAAAATAGGCCTATGTACATTCATTTGACAGTTAA
Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:81884908-81884927
CAAACTATTTATATAACCATTCACACGTTT81884908GGCAAGGCACAAAAGAAAAAAGATAAAGTATTTTATTTAATATCTTTAAC
Gossypium rotundifolium isolate GPK201 chromosome 2.
CP106723.1:46002533-46002552
AAGAAAATAGAATAGGAAGAGAGGAAATTC46002533GGCAAGGCACAAAAGAAAAAGAAAAAGATGAATGCTCACAACAAAAATTT
Zea mays genome assembly, chromosome: 5.
LR897971.1:12889089-12889108
ACCAACTAGGTCGAACGTCGAACGGTCGAA12889089GGCAAGGCACAAAAGAAAAATAGGCCTATGTACATTCATTTGACAGTTAA
Bromus sterilis genome assembly, chromosome: 2.
OX465596.1:288447771-288447790
CCACATTATCTGCATTTGTGCACATACCAA288447771GGCAAGGCACAAAAGAAAAATGTTAGTCTCGCCAACATCCACCGGTTCAT
Myrica gale genome assembly, chromosome: 22.
OZ005619.1:15144823-15144842
CTAAGAAATAGATGCTGAAAGTTAAAGGGA15144823GGCAAGGCACAAAAGAAAAACATGAAAAGAATTCGATGTTAATATTAGGA
Melitaea cinxia chromosome 10.
CP049657.1:15511115-15511134
CGTTGACGGAAGTCAGACCCTGGCAACAAA15511115GGCAAGGCACAAAAGAAAAAGAGTATTAAAATGATGTACAATAATGTTTA
Asteroscopus sphinx genome assembly, chromosome: 16.
OX453017.1:14508953-14508972
ACACTGTTTAAAAAAATAAACTTTATTTCA14508953GGCAAGGCACAAAAGAAAAAACTTTATTTGACATCGTAAACATACACCCA
Octopus vulgaris genome assembly, chromosome: 3.
OX597816.1:170786670-170786689
TAAAGTTGAACGCTTTCGTTCAAAGCTCTG170786670GGCAAGGCACAAAAGAAAAAGAAGCAAAATTATCATCAATATCATTTGAT
Drosophila funebris genome assembly, chromosome: X.
OY282424.1:1688578-1688597
ATGCAAACTTCTCATCTAGTAATTGCATTT1688578GGCAAGGCACAAAAGAAAAAAAAACAAACACATTGTAATCTATGCGTATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTTTCTTTTGTGCCTTGCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTTTCTTTTGTGCCTTGCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.214 | 0.205 | search_plus_done; http://172.18.8.135:50400/match?q=TTTTTCTTTTGTGCCTTGCC&k=0&no_gap=0&offset=0&limit=50
0.470 | 0.257 | search_minus_done; http://172.18.8.135:50400/match?q=GGCAAGGCACAAAAGAAAAA&k=0&no_gap=0&offset=0&limit=37
0.483 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).