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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:07:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pelobates cultripes genome assembly, chromosome: 07.
OW240918.1:23856411-23856430
ACTACGTTATTCAAACAGGGAGAGTGATTT23856411TTAATGCCCAGCCAATTCTTTCCATTTCAACAACATTATCAAATGTCACA
Quercus mongolica subsp. crispula mRNA, clone: Qm_001_10O01, 5'end sequence, expressed in inner bark.
DB999148.2:497-516
TTGCCTACCTGTTGCCTGCCATTGTCCATG497TTAATGCCCAGCCAATTCTTTCTCCTGGAGATGGCCCAATTGTTTTGGTA
Quercus robur xylem EST, clone LG0AAB8YK22RM1, similar to RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 . - Oryza sativa subsp. japonica.
FP032316.1:293-312
TTGCCTACCTGTTGCCTGCCATTGTCCATG293TTAATGCCCAGCCAATTCTTTCTCCTGGAGATGGCCCAATTGTTTTGGTA
Quercus robur root EST, clone LG0AAD30YN07RM1, similar to RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 . - Oryza sativa subsp. japonica.
FP065491.1:262-281
TTGCCTACCTGTTGCCTGCCATTGTCCATG262TTAATGCCCAGCCAATTCTTTCTCCTGGAGATGGCCCAATTGTTTTGGTA
TSA: Cajanus cajan cultivar Asha contig14922.Asha mRNA sequence.
EZ662786.1:494-513
TTGCATACTTGTTGCCTGCCATAGTGCATG494TTAATGCCCAGCCAATTCTTGAACCTGGAGATGGGCCTATTGTGTTAGTT
TSA: Betula platyphylla Unigene2736_ya_RNA mRNA sequence.
JP671037.1:37-56
TTGCGAAGTGTAGCCTCAGCCTCCGGAAAA37TTAATGCCCAGCCAATTCTTAAGTCTCCCCCAACATCTTTTAACTCGCAT
TSA: Betula platyphylla Unigene20758_All.Beplwood mRNA sequence.
KA260679.1:1306-1325
TTGCGAAGTGTAGCCTCAGCCTCCGGAAAA1306TTAATGCCCAGCCAATTCTTAAGTCTCCCCCAACATCTTTTAACTCGCAT
Quercus dentata isolate Qdleaves-2020 chromosome 4.
CP116447.1:40911731-40911750
CTTGCCTACCGTTGCCTGCCATTGTCCATG40911731TTAATGCCCAGCCAATTCTTTGTAAAGGGTGTAATGTTTGGGTGAAACGT
Quercus dentata isolate Qdleaves-2020 chromosome 4.
CP116447.1:106318097-106318116
TTGCCTACCTGTTGCCTGCCATTGTCCATG106318097TTAATGCCCAGCCAATTCTTTGTAAAGGGTGTAATGTTTGGCTGAAACGT
Quercus dentata isolate Qdleaves-2020 chromosome 5.
CP116448.1:15593276-15593295
TTGCCTACCTGTTGCCTGCCATTGTCCATG15593276TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGGTTGATTTAT
Quercus dentata isolate Qdleaves-2020 chromosome 6.
CP116449.1:60288492-60288511
TTGCCTACCTGTTGCCTGCCATTGTCCATG60288492TTAATGCCCAGCCAATTCTTTGTAAAGGGTGTAATGTTTGGCTGAAACGT
Quercus variabilis isolate HB chromosome 5b.
CP129437.1:11908721-11908740
TTGCCTACCTGTTGCCTGCCATTGTCCATG11908721TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGGTTGATTTAT
Quercus variabilis isolate HB chromosome 7b.
CP129439.1:22024112-22024131
TTGCCTACCTGTTGCCTGCCATTGTCCATG22024112TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTTGATTTATTCTT
Quercus variabilis isolate HB chromosome 5a.
CP129449.1:13485262-13485281
TTGCCTACCTGTTGCCTGCCATTGTCCATG13485262TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGGTTGATTTAT
Quercus variabilis isolate HB chromosome 7a.
CP129451.1:22446494-22446513
TTGCCTACCTCTTGCCTGTCATTGTCCATG22446494TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGGTTGATTTAT
Quercus robur genome assembly, chromosome: 2.
OW028766.1:94598443-94598462
TTGCCTACCTGTTGCCTGCCATTGTCCATG94598443TTAATGCCCAGCCAATTCTTTGTAAAGGGTGTAATGTTTGGCTGAAACGT
Quercus robur genome assembly, chromosome: 2.
OW028766.1:94694583-94694602
TTGCCTACCTGTTGCCTGCCATTGTCCATG94694583TTAATGCCCAGCCAATTCTTTGTAAAGGGTGTAATGTTTGGCTGAAACGT
Quercus robur genome assembly, chromosome: 4.
OW028768.1:9356202-9356221
TTGCCTACCTGTTGCCTGCCATTGTCCATG9356202TTAATGCCCAGCCAATTCTTTGTAAAGGGTGTAATGTTTGGCTGAAACGT
Quercus robur genome assembly, chromosome: 5.
OW028769.1:10941217-10941236
TTGCCTACCTGTTGCCTGCCATTGTCCATG10941217TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGGTTGATTTAT
Quercus robur genome assembly, chromosome: 5.
OW028769.1:11161994-11162013
TTGCCTACCTGTTGCCTGCCATTGTCCATG11161994TTAATGCCCAGCCAATTCTTTTTAAGGGTGTAATGTTTGGGTTGATTTAT
Quercus robur genome assembly, chromosome: 5.
OW028769.1:11541375-11541394
TTGCCTACCTGTTGCCTGCCATTGTCCATG11541375TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGGTTGATTTAT
Quercus robur genome assembly, chromosome: 7.
OW028770.1:32351832-32351851
TTGCCTACCTATTGCTTGCCATTGTCCATG32351832TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGCTAAAACGCG
Quercus robur genome assembly, chromosome: 11.
OW028775.1:7832109-7832128
TTGCCTACCTGTTGCCTGCCATTGTCCATG7832109TTAATGCCCAGCCAATTCTTTGTAAAGGGTGTAATGTTTGGCTGAAACGT
Quercus cerris genome assembly, chromosome: 3.
OY770008.1:10878984-10879003
TTGCCTACCTGTTGCCTGCCATTGTCCATG10878984TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGGTTGATTTAT
Quercus cerris genome assembly, chromosome: 3.
OY770008.1:10936706-10936725
TTGCCTACCTGTTGCCTGCCATTGTCCATG10936706TTAATGCCCAGCCAATTCTTTGTAAGGGTGTATTGTTTGGGTTGATTTAT
Quercus cerris genome assembly, chromosome: 3.
OY770008.1:11000778-11000797
TTGCCTACCTGTTGCCTGCCATTGTCCATG11000778TTAATGCCCAGCCAATTCTTTGTAAGGATGTAATGTTTGGTTGATTTATT
Quercus cerris genome assembly, chromosome: 11.
OY770016.1:21868307-21868326
TTGCCTACCTGTTGCCTGCCATTGTCCATG21868307TTAATGCCCAGCCAATTCTTTGTAGGGGTGTAATGTTTGGGTTGATTTAT
Myrica gale genome assembly, chromosome: 4.
OZ005601.1:5255695-5255714
TTGCCTACCTGTTACCTGCCATTGTCCATG5255695TTAATGCCCAGCCAATTCTTGGTAAGGATGTAACATTTGGATAATTGGAT
TSA: Cajanus cajan cultivar UPAS 120 contig05248.UPAS mRNA sequence.
EZ622965.1:321-340
AACTAACACAATAGGCCCATCTCCAGGTTC321AAGAATTGGCTGGGCATTAACATGCACTATGGCAGGCAACAAGTATGCAA
54-L026093.SEQ Pigeonpea genomic pBluescript library Cajanus cajan genomic 3', genomic survey sequence.
CZ445554.1:711-730
GACATTATTTAGCTTCCTTGTGAGCTCACC711AAGAATTGGCTGGGCATTAACATGCACTATGGCAGGCAACAAGTATGCAA
Coriaria nepalensis isolate Cnep1 chromosome 07.
CP114467.1:8961738-8961757
CACTAAGTAATCTAATATTATATCATTACC8961738AAGAATTGGCTGGGCATTAACATGGACAATTGCAGGCAATAAGTATGCGA
Coriaria nepalensis isolate Cnep1 chromosome 07.
CP114487.1:9010885-9010904
CACTAAGTAATCTAATATTATATCATTACC9010885AAGAATTGGCTGGGCATTAACATGGACAATTGCAGGCAATAAGTATGCGA
Quercus dentata isolate Qdleaves-2020 chromosome 4.
CP116447.1:30583537-30583556
ACGTTTTAGCCAAACATTACACCCTTTACA30583537AAGAATTGGCTGGGCATTAACATGGACAATGGCAGGCAACAAGTAGGCAA
Quercus dentata isolate Qdleaves-2020 chromosome 4.
CP116447.1:63478653-63478672
ACGTTTCAGCCAAACATTACACCCTTTACA63478653AAGAATTGGCTGGGCATTAACATGGACAATGGCAGGCAACAGGTAGGCAA
Quercus dentata isolate Qdleaves-2020 chromosome 7.
CP116450.1:20518255-20518274
CGCGTTTTAGCCAAACATTACACCCTTACA20518255AAGAATTGGCTGGGCATTAACATGGACAATGGCAAGCAATAGGTAGGCAA
Quercus dentata isolate Qdleaves-2020 chromosome 9.
CP116452.1:27845828-27845847
GTTTCAGCGCCAAACATTACACCCTTTACA27845828AAGAATTGGCTGGGCATTAACATGGACAATGGCAGGCAACAGGTAGGCAA
Quercus dentata isolate Qdleaves-2020 chromosome 9.
CP116452.1:53352694-53352713
ATGTTTCAGCCAAACATTACACCCTTTACA53352694AAGAATTGGCTGGGCATTAACATGGACAATGGCAGGCAACAGGTAGGCAA
Quercus robur genome assembly, chromosome: 4.
OW028768.1:18474265-18474284
ACGTTTCAGCCAAACATTACACCCTTTACA18474265AAGAATTGGCTGGGCATTAACATGGACAATGGCAGGCAACAAGTAGGCAA
Myrica gale genome assembly, chromosome: 2.
OZ005599.1:25354723-25354742
ATCCAATTATCCAAATGTTACATCCTTACC25354723AAGAATTGGCTGGGCATTAACATGGACAATGGCAGGTAACAGGTAGGCAA
Myrica gale genome assembly, chromosome: 18.
OZ005615.1:14299797-14299816
ATCCAATTATCCAAATGTTACATCCTTACC14299797AAGAATTGGCTGGGCATTAACATGGACAATGGCAGGTAACAGGTAGGCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/Ttaatgcccagccaattctt
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : Ttaatgcccagccaattctt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.564 | 0.556 | search_plus_done; http://172.18.8.135:50400/match?q=TTAATGCCCAGCCAATTCTT&k=0&no_gap=0&offset=0&limit=50
0.726 | 0.161 | search_minus_done; http://172.18.8.135:50400/match?q=AAGAATTGGCTGGGCATTAA&k=0&no_gap=0&offset=0&limit=22
0.734 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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