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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 17:04:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:9626616-9626635
ATTTAACTTTTTTCTTATTTGAAAGAAGAA9626616AAAGGAGACGTTGCAAGTGGCTTCGGATAGTTGGGGACACAAAGTTCGAG
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:10404078-10404097
ATTTAACTTTTTTCTTATTTGAAAGAAGAA10404078AAAGGAGACGTTGCAAGTGGCTTCGGATAGTTGGGGACAGAAAGTGAGAG
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:10106337-10106356
ATTTAACTTTTTTCTTATTTGAAAGAAGAA10106337AAAGGAGACGTTGCAAGTGGCTTCGGATAGTTGGGGACACAAAGTTCGAG
Mdfw2045j11.y1 Mdfw Malus domestica cDNA clone Mdfw2045j11 5', mRNA sequence.
CN996504.1:107-126
CTCGAACTTTGTGTCCCCAACTATCCGAAG107CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAAGTTAAA
Mdfrt3054f19.y1 Mdfrt Malus domestica cDNA clone Mdfrt3054f19 5', mRNA sequence.
CO898741.1:14-33
CAACTATCCGAAG14CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Mdfrt3058b08.y1 Mdfrt Malus domestica cDNA clone Mdfrt3058b08 5', mRNA sequence.
CO902684.1:14-33
CAACTATCCGAAG14CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Mddb5024e21.y1 Mddb Malus domestica cDNA clone Mddb5024e21 5', mRNA sequence.
CO903877.1:103-122
CTCGAACTTTGTGTCCCCAACTATCCGAAG103CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Mdrtp1001N10.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA, mRNA sequence.
DT040217.1:130-149
CTCTCACTTTCTGTCCCCAACTATCCGAAG130CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Mdfwf2084P06.g1 Apple_EST_Mdfwf Malus domestica cDNA 5', mRNA sequence.
GO512162.1:134-153
CTCTCACTTTCTGTCCCCAACTATCCGAAG134CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Mdfbg8016K08.g1 Apple_EST_Mdfbg Malus hybrid rootstock cDNA 5', mRNA sequence.
GO518205.1:36-55
CCGTTGCTGTCGGTCCCCAACTATCCGAAG36CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:25538758-25538777
CTCGAACTTTGTGTCCCCAACTATCCGAAG25538758CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:25979159-25979178
CTCGAACTTTGTGTCCCCAACTTTCCGAAG25979159CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:28340862-28340881
CTCTCACTTTCTGTCCCCAACTATCCGAAG28340862CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:27610419-27610438
CTCGAACTTTGTGTCCCCAACTATCCGAAG27610419CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus domestica genome assembly, chromosome: 2.
OU696678.1:27389726-27389745
CTCGAACTTTGTGTCCCCAACTATCCGAAG27389726CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus domestica genome assembly, chromosome: 2.
OU744543.1:27873641-27873660
CTCTCACTTTCTGTCCCCAACTATCCGAAG27873641CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus domestica genome assembly, chromosome: 2.
OU744954.1:27414697-27414716
CTCGAACTTTGTGTCCCCAACCATCCGAAG27414697CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT
Malus domestica genome assembly, chromosome: 2.
OU744992.1:28157516-28157535
CTCTCACTTTCTGTCCCCAACTATCCGAAG28157516CCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAGAAAAAAGTTAAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/aaaggagacgttgcaagtgg
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : aaaggagacgttgcaagtgg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.328 | 0.319 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGGAGACGTTGCAAGTGG&k=0&no_gap=0&offset=0&limit=50
0.991 | 0.663 | search_minus_done; http://172.18.8.135:50400/match?q=CCACTTGCAACGTCTCCTTT&k=0&no_gap=0&offset=0&limit=47
1.001 | 0.010 | cgi_end;

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