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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 20:08:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. viridis mRNA, clone: KALE-037B23, 3' end sequence.
DK529359.1:310-327
AAAGGGACCATGACATGAACTCATATCTGA310AAGCGGTTAGGAGTGTGATAAGAAAAGAAGTGAGTCAGATAAGGAGGT
Brassica oleracea var. viridis mRNA, clone: KALE-101I09, 3' end sequence.
DK553958.1:375-392
AAAGGGACCATGACATGAACTCATATCTGA375AAGCGGTTAGGAGTGTGATAAGAAAAGAAGTGAGTCAGATAAGGAGGT
0109304 Brassica napus Damaged cotyledons Brassica napus cDNA, mRNA sequence.
EV227378.1:148-165
AGAGGGACCATGACATGAACTCATATCTGA148AAGCGGTTAGGAGTGTGATAAGGAAAGAAGTGAGTCAGATAAGGAGGG
RS1AG91TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW714230.1:463-480
AGAGGGACCATGACATGAACTCTTATCTGA463AAGCGGTTAGGAGTGTGATAAGAAAAGAAGTAAGTCAGATAAGAGAGC
RR4DN69TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY923160.1:282-299
AGAGGGACCATGACATGAACTCTTATCTGA282AAGCGGTTAGGAGTGTGATAAGAAAAGAAGTGAGTCAGATAAGGAGAG
RR4F880TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD558490.1:145-162
AGAGGGACCATGACATGAACTCTTATCTGA145AAGCGGTTAGGAGTGTGATAAGAAAAGAAGTGAGTCAGATAAGGAGAG
RS3EK86TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD576990.1:576-593
AGAGGGACCATGACATGAACTCTTATCTGA576AAGCGGTTAGGAGTGTGATAAGAAAAGAAGTGAGTCAGATAAGGAGAG
Raphanus sativus mRNA, clone: RSCF01C15, 5' end sequence.
FY428093.1:555-572
AGAGGGACCATGACATGAACTCTTATCTGA555AAGCGGTTAGGAGTGTGATAAGAAAAGAAGTGAGTCAGATAAGGAGAG
Raphanus sativus mRNA, clone: RSCF12J17, 5' end sequence.
FY431021.1:555-572
AGAGGGACCATGACATGAACTCTTATCTGA555AAGCGGTTAGGAGTGTGATAAGAAAAGAAGTGAGTCAGATAAGGAGAG
Raphanus sativus mRNA, clone: RSCF14N04, 5' end sequence.
FY431570.1:555-572
AGAGGGACCATGACATGAACTCTTATCTGA555AAGCGGTTAGGAGTGTGATAAGAAAAGAAGTGAGTCAGATAAGGAGAG
c10_12na_1j.s 12na Brassica napus cDNA clone c10_12na_1j 5, mRNA sequence.
GT081304.1:192-209
AGAGGGACCACGACATGAACTCTTACCTTA192AAGCGGTTAGGAGTGTGATAAGGAAAGAAGTGAGTCAGATAAGGAGGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_24204.
FX727931.1:1818-1835
AAAGGGATCATGACATGAACTCATACCTGA1818AAGCGGTTAGGAGTGTGATAAGAAAAGAAGTGAGTCAGATAAGGAGGT
BOT01-53O21TF BOT01 Brassica oleracea genomic clone BOT01-53O21, genomic survey sequence.
FI720919.1:149-166
AGAGGGACCACGACATGAACTCTTACCTTA149AAGCGGTTAGGAGTGTGATAAGGAAAGAAGTGAGTCAGATAAGGAGGG
BOT01-104H17TF BOT01 Brassica oleracea genomic clone BOT01-104H17, genomic survey sequence.
FI753042.1:478-495
AGAGGGACCACGACATGAACTCTTACCTTA478AAGCGGTTAGGAGTGTGATAAGGAAAGAAGTGAGTCAGATAAGGAGGG
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69097775-69097792
AGAGGGACCACGACATGAACTCATATCTGA69097775AAGCGGTTAGGAGTGTGATAAGGAAAGAAGTGAGTCAGATAAGGAGGG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:54443947-54443964
AAAGGGACCATGACATGAACTCATATCTGA54443947AAGCGGTTAGGAGTGTGATAAGAAAAGAAGTGAGTCAGATAAGGAGGT
Brassica napus genome assembly, chromosome: A08.
HG994362.1:26226561-26226578
AAAGAGATCATGACATGAACTCATACCTGA26226561AAGCGGTTAGGAGTGTGATAAGAAAAGAAGTGAGTCAGATAAGGAGGT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:53033466-53033483
AGAGGGACCATGACATGAACTCATATCTGA53033466AAGCGGTTAGGAGTGTGATAAGGAAAGAAGTGAGTCAGATAAGGAGGG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41183735-41183752
AGAGGGACCACGACATGAACTCTTACCTTA41183735AAGCGGTTAGGAGTGTGATAAGGAAAGAAGTGAGTCAGATAAGGAGGG
Brassica rapa genome, scaffold: A09.
LR031568.1:57181949-57181966
AGAGGGACCACGACATGAACTCATATCTGA57181949AAGCGGTTAGGAGTGTGATAAGGAAAGAAGTGAGTCAGATAAGGAGGG
Brassica rapa genome, scaffold: A08.
LR031575.1:24891659-24891676
AAAGGGATCATGACATGAACTCATACCTGA24891659AAGCGGTTAGGAGTGTGATAAGAAAAGAAGTGAGTCAGATAAGGAGGT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50439544-50439561
AGAGGGACCACGACATGAACTCTTACCTTA50439544AAGCGGTTAGGAGTGTGATAAGGAAAGAAGTGAGTCAGATAAGGAGGG
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:19008096-19008113
AGAGGGACCATGACATGAACTCTTATCTGA19008096AAGCGGTTAGGAGTGTGATAAGAAAAGAGGTGAGTCAGATAAGGAGAG
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:30678404-30678421
AAAGGGATCATGACATGAACTCATACCTGA30678404AAGCGGTTAGGAGTGTGATAAGAAAAGAAGTGAGTCAGATAAGGAGGT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:67705959-67705976
AGAGGGACCACGACATGAACTCATATCTGA67705959AAGCGGTTAGGAGTGTGATAAGGAAAGAAGTGAGTCAGATAAGGAGGG
Mamestra brassicae genome assembly, chromosome: Z.
LR990987.1:25395129-25395146
ACGAGAATATTAAAAATACATTTAAATAAA25395129AAGCGGTTAGGAGTGTGAGAGAAAACTAGCCGGATAGTCACCGGATGA
0108860 Brassica napus Damaged cotyledons Brassica napus cDNA, mRNA sequence.
EV226934.1:415-432
CCCTCCTTATCTGACTCACTTCTTTCCTTA415TCACACTCCTAACCGCTTTCAGATATGAGTTCATGTCATGGTCCCTCT
RS1AG91JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW718914.1:496-513
CTCTCCTTATCTGACTTACTTCTTTTCTTA496TCACACTCCTAACCGCTTT
RR1CE02JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EX752506.1:496-513
CTCTCCTTATCTGACTCACTTCTTTTCTTA496TCACACTCCTAACCGCTTTCAGATAAGAGTTCATGTCATGGTCCCTCT
RR4DN69JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY918987.1:448-465
CTCTCCTTATCTGACTCACTTCTTTTCTTA448TCACACTCCTAACCGCTTTCAGATAAGAGTTCATGTCATGGTCCCTCT
RR1EZ47JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD529857.1:386-403
CTCTCCTTATCTGACTCACTTCTTTTCTTA386TCACACTCCTAACCGCTTTCAGATAAGAGTTCATGTCATGGTCCTTCT
RR4F880JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD554378.1:440-457
CTCTCCTTATCTGACTCACTTCTTTTCTTA440TCACACTCCTAACCGCTTTCAGATAAGAGTTCATGTCATGGTCCCTCT
RS3EK86JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD581378.1:544-561
CTCTCCTTATCTGACTCACTTCTTTTCTTA544TCACACTCCTAACCGCTTTCAAATAAAAGTTCATGTCATGGTCCCTCT
Raphanus sativus mRNA, clone: RSCF19B14, 5' end sequence.
FY432657.1:418-435
CTCTCCTTATCTGACTCACTTCTTTTCTTA418TCACACTCCTAACCGCTTTCAGATAAGAGTTCATGTCATGGTCCCTCT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3655.
FX659697.1:468-485
CTCTCCTTATCTGACTCACTTCTTTTCTTA468TCACACTCCTAACCGCTTTCAGATAAGAGTTCATGTCATGGTCCCTCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_9559.
FX694162.1:353-370
ACCTCCTTATCTGACTCACTTCTTTTCTTA353TCACACTCCTAACCGCTTTCAGGTATGAGTTCATGTCATGATCCCTTT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_15163.
FX788245.1:350-367
CTCTCCTTATCTGACTCACTTCTTTTCTTA350TCACACTCCTAACCGCTTTCAGATAAGAGTTCATGTCATGGTCCCTCT
TSA: Raphanus sativus RS13756 mRNA sequence.
JT798303.1:455-472
CTCTCCTTATCTGACTTACTTCTTTTCTTA455TCACACTCCTAACCGCTTTCAGATAAGAGTTCATGTCATGGTCCCTCT
BOHQC29TR BOHQ Brassica oleracea genomic clone BOHQC29, genomic survey sequence.
BH520214.1:707-724
ACCTCCTTATCTGACTCACTTCTTTTTCTA707TCACACTCCTAACCGCTTTCAGATATGAGTTCATGTCATGGGTCCCTT
BONBG58TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONBG58, genomic survey sequence.
BZ488992.1:30-47
GCTCCTTATCTGACTCACTTCTTTCCTTA30TCACACTCCTAACCGCTTTAAGGTAAGAGTTCATGTCGTGGTCCCTCT
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:77312-77329
ACCTCCTTATCTGACTCACTTCTTTTCTTA77312TCACACTCCTAACCGCTTTCAGGTATGAGTTCATGTCATGATCCCTTT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:487464-487481
CCCTCCTTATCTGACTCACTTCTTTCCTTA487464TCACACTCCTAACCGCTTTAAGGTAAGAGTTCATGTCGTGGTCCCTCT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:201545-201562
ACCTCCTTATCTGACTCACTTCTTTTCTTA201545TCACACTCCTAACCGCTTTCAGATATGAGTTCATGTCATGGTCCCTTT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:216522-216539
ACCTCCTTATCTGACTCACTTCTTTTCTTA216522TCACACTCCTAACCGCTTTCAGATATGAGTTCATGTCATGGTCCCTTT
Arabis alpina genome assembly, chromosome: 1.
LT669788.1:957870-957887
CTTTCCTTATCTGAGTCACTTCTTTTCTTA957870TCACACTCCTAACCGCTTTCAGATACGAGTTCATATCATGGTCCCTTC
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:25024856-25024873
CTCTCCTTATCTGACTCACCTCTTTTCTTA25024856TCACACTCCTAACCGCTTTCAGATAAGAGTTCATGTCATGGTCCCTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/aagcggttaggagtgtga
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : aagcggttaggagtgtga | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.267 | 1.258 | search_plus_done; http://172.18.8.135:50400/match?q=AAGCGGTTAGGAGTGTGA&k=0&no_gap=0&offset=0&limit=50
2.109 | 0.842 | search_minus_done; http://172.18.8.135:50400/match?q=TCACACTCCTAACCGCTT&k=0&no_gap=0&offset=0&limit=24
2.122 | 0.013 | cgi_end;

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