GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 15:26:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea nil mRNA, clone: JMFS004C08, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY936193.1:329-352
GCAGCATCTAATAACAAGAGCAGCAGCAAC329AATAACATGAGTGGGCAGTTCGGTGACACCACATACACTAAGGTGTTTGTTGGT
Ipomoea nil mRNA, clone: JMFS065F12, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY941006.1:328-351
GCAGCATCTAATAACAAGAGCAGCAGCAAC328AATAACATGAGTGGGCAGTTCGGTGACACCACATACACTAAGGTGTTTGTTGGT
Ipomoea nil mRNA, clone: JMFS067F10, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY941178.1:337-360
GCAGCATCTAATAACAAGAGCAGCAGCAAC337AATAACATGAGTGGGCAGTTCGGTGACACCACATACACTAAGGTGTTTGTTGGT
Ipomoea nil mRNA, clone: JMFS132C08, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY946127.1:387-410
GCAGCATCTAATAACAAGAGCAGCAGCAAC387AATAACATGAGTGGGCAGTTCGGTGACACCACATACACTAAGGTGTTTGTTGGT
Ipomoea triloba cultivar NCNSP0323 chromosome 4.
CP025663.1:27468129-27468152
ACCAACAAACACCTTAGTGTATGTGGTGTC27468129ACCGAACTGCCCACTCATGTTATTATTGCTGCTGCTGTTGTTAGATACTGCTGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/aataacatgagtgggcagttcggt
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : aataacatgagtgggcagttcggt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.476 | 0.467 | search_plus_done; http://172.18.8.135:50400/match?q=AATAACATGAGTGGGCAGTTCGGT&k=0&no_gap=0&offset=0&limit=50
0.497 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=ACCGAACTGCCCACTCATGTTATT&k=0&no_gap=0&offset=0&limit=46
0.498 | 0.001 | cgi_end;

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