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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 10:40:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS08022C05 KS08 Capsicum annuum cDNA, mRNA sequence.
BM068349.1:396-419
CCAGTACGGCGTACTTGTCCCTCCTTGTCA396AATTAGTACACTCGAACCCCAGAGTACCACCGAGAACTTTCTGAATATAATTAG
KS15019E07 KS15 Capsicum annuum cDNA, mRNA sequence.
GD065165.1:347-370
CCAGTACGGCGTACTTGTCCCTCCTTGTCA347AATTAGTACACTCGAACCCCAGAGTACCACCGAGAACTTTCTGAATATAATTAG
KS15032H04 KS15 Capsicum annuum cDNA, mRNA sequence.
GD066423.1:369-392
CCAGTACGGCGTACTTGTCCCTCCTTGTCA369AATTAGTACACTCGAACCCCAGAGTACCACCGAGAACTTTCTGAATATAATTAG
KS15033B07 KS15 Capsicum annuum cDNA, mRNA sequence.
GD066450.1:369-392
CCAGTACGGCGTACTTGTCCCTCCTTGTCA369AATTAGTACACTCGAACCCCAGAGTACCACCGAGAACTTTCTGAATATAATTAG
TSA: Capsicum annuum MGMT_Contig10680, mRNA sequence.
JW060924.1:435-458
CCAGTACGGCGTACTTGTCCCTCCTTGTCA435AATTAGTACACTCGAACCCCAGAGTACCACCGAGAACTTTCTGAATATAATTAG
Capsicum annuum Takanotsume DNA, chromosome 9, sequence.
AP026704.1:56837029-56837052
CCAGTACGGCGTACTTGTCCCTCCTTGTCA56837029AATTAGTACACTCGAACCCCAGAGTACCACCGAGAACTTTCTGAATATAATTAG
KS15020C08 KS15 Capsicum annuum cDNA, mRNA sequence.
GD065236.1:625-648
CTAATTATATTCAGAAAGTTCTCGGTGGTA625CTCTGGGGTTCGAGTGTACTAATTTGACAAGGAGGGACAAGTACGCCGTACTGG
KS15044F01 KS15 Capsicum annuum cDNA, mRNA sequence.
GD067540.1:463-486
CTAATTATATTCAGAAAGTTCTCGGTGGTA463CTCTGGGGTTCGAGTGTACTAATTTGACAAGGAGGGACAAGTACGCCGTACTGG
KS15055D03 KS15 Capsicum annuum cDNA, mRNA sequence.
GD068561.1:462-485
CTAATTATATTCAGAAAGTTCTCGGTGGTA462CTCTGGGGTTCGAGTGTACTAATTTGACAAGGAGGGACAAGTACGCCGTACTGG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 9.
CP124711.1:125568841-125568864
CTAATTATATTCAAAAAGTTCTTGGTGGTA125568841CTCTGGGGTTCGAGTGTACTAATTTGACAAGGAGGGACAAGTACGCCGTACTGG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 9.
CP124723.1:210657379-210657402
CTAATTATATTCAGAAAGTTCTCGGTGGTA210657379CTCTGGGGTTCGAGTGTACTAATTTGACAAGGAGGGACAAGTACGCCGTACTGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/aattagtacactcgaaccccagag
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : aattagtacactcgaaccccagag | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.389 | 0.381 | search_plus_done; http://172.18.8.135:50400/match?q=AATTAGTACACTCGAACCCCAGAG&k=0&no_gap=0&offset=0&limit=50
0.677 | 0.288 | search_minus_done; http://172.18.8.135:50400/match?q=CTCTGGGGTTCGAGTGTACTAATT&k=0&no_gap=0&offset=0&limit=44
0.681 | 0.003 | cgi_end;

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