GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 00:02:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gossypium rotundifolium isolate GPK201 chromosome 8.
CP106729.1:195447040-195447058
ACTAAAATGTGCATTAAACCTAGAAAAAGA195447040AATTCGTGGAGTTCATTGGGAATACGGTTTTAAGGTACAACGGCTCCTT
Xylota segnis genome assembly, chromosome: 3.
OY757238.1:14234003-14234021
AAACCAGAAGCAGTCTAGTCTTATCGACAT14234003AATTCGTGGAGTTCATTGGAATAATCCTGAACGAGAAGTAATAAAAAAA
Sciurus vulgaris genome assembly, chromosome: 2.
LR738612.1:79791766-79791784
GTTTCCATGCTCCCATAGGGGTGCTATTTT79791766CCAATGAACTCCACGAATTATTGGTGATAGGAAATTTATCATTCTTGAG
52-L025626.SEQ Pigeonpea genomic pGEM-T library Cajanus cajan genomic 5', genomic survey sequence.
CZ681963.1:223-241
CAAACGTCCCGGATGTCTGCGAATTCACGC223CCAATGAACTCCACGAATTCAAGTGGGTTTGAAAGTCATGGTAGTCCAC
Gossypium raimondii isolate D5-4 chromosome D5_08.
CP032560.1:2356347-2356365
AAGGAGCCGTTGTACCTTAAAACCGTATTC2356347CCAATGAACTCCACGAATTTGTTTTTCTAGGTTTAATGCACACTTTAGT
Gossypium bickii isolate GPG1lz chromosome 8.
CP106712.1:3287497-3287515
AAGGAGCCGTTGTACCTTAAAATCGTATTC3287497CCAATGAACTCCACGAATTTGTTTTTCTAGGTTTAATGCACACTTTAGT
Ligustrum vulgare genome assembly, chromosome: 3.
OY743170.1:45663725-45663743
TATTATATTTTGTAATATATTAGAACATCT45663725CCAATGAACTCCACGAATTGGAGCTGATGTAGCAACAAAATGGACATAC
Ceutorhynchus assimilis genome assembly, chromosome: 8.
OU892284.1:4344123-4344141
AATTCGCCAATAACAGAATTAAAAATCATT4344123CCAATGAACTCCACGAATTTCAAGGAAGGGTCGTGTCGAAAACAACGTG
Diarsia brunnea genome assembly, chromosome: 5.
OX459001.1:17121714-17121732
AGAACGTTTCACATGAGTATTGCTGTACTG17121714CCAATGAACTCCACGAATTTATGGCAAAAACCCAAAATGTTGATATTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/aattcgtggagttcattgg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : aattcgtggagttcattgg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.414 | 0.405 | search_plus_done; http://172.18.8.135:50400/match?q=AATTCGTGGAGTTCATTGG&k=0&no_gap=0&offset=0&limit=50
0.494 | 0.080 | search_minus_done; http://172.18.8.135:50400/match?q=CCAATGAACTCCACGAATT&k=0&no_gap=0&offset=0&limit=48
0.499 | 0.005 | cgi_end;

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