GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 15:27:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig5329, mRNA sequence.
JW055573.1:415-438
TCATAGGCTCTCTACACTTACCATTCTTGC415ACAAACAATAAGTCGCCTTACCTCTAACCCCTTTAGTTTCATCATCTAGCATAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:263786304-263786327
ATATGCTAGATGATGAAACTAAAGGGGTTA263786304GAGGTAAGGCGACTTATTGTTTGTGCAAGAATGGTAAGTGTAGAGAGCCTATGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/acaaacaataagtcgccttacctc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : acaaacaataagtcgccttacctc | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.351 | 0.342 | search_plus_done; http://172.18.8.135:50400/match?q=ACAAACAATAAGTCGCCTTACCTC&k=0&no_gap=0&offset=0&limit=50
0.425 | 0.075 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGTAAGGCGACTTATTGTTTGT&k=0&no_gap=0&offset=0&limit=49
0.426 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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