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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-13 01:36:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Chionomys nivalis genome assembly, chromosome: 21.
OX465469.1:18431503-18431520
GGGCATTCTCTCACTCCACCCCGCCTCCCC18431503ACCAAACCTGATCACTCGTGTTCTACTCCCCACCTGCCCTCATTTCAC
Bos taurus breed Wagyu chromosome Y.
CP128563.1:3588632-3588649
GGGCCTATAAAACAAGCAAGCCAGTGACAG3588632ACCAAACCTGATCACTCGTTATTCCCCTCATCTAGCTCATCTTCCTAT
Bos taurus genome assembly, chromosome: Y.
LR962769.1:25772737-25772754
GGGCCTATAAAACAAGCAAGCCAGTGACAG25772737ACCAAACCTGATCACTCGTTATTCCCCTCATCTAGCTCATCTTCCTAT
Phalacrocorax carbo genome assembly, chromosome: 3.
OY997603.1:52932106-52932123
CGTTGGTGTGATATCATTCCTCTCACAGAC52932106ACCAAACCTGATCACTCGAGTACTGGGACTGCTGCAGAAGACTTTGAT
BOT01-104H17TR BOT01 Brassica oleracea genomic clone BOT01-104H17, genomic survey sequence.
FI755426.1:620-637
TGTATCTGCTTTCCTTGCGTCCGAAGAAAT620ACCAAACCTGATCACTCGACGCGATCCTCGACAGCGCTGAGATATAAC
Bos taurus clone CH240-346E23, WORKING DRAFT SEQUENCE, 13 unordered pieces.
AC220797.1:74073-74090
TGGGCCTATAAACAAGCAAGCCAGTGACAG74073ACCAAACCTGATCACTCGTTATTCCCCTCATCTAGCTCATCTTCCTAT
Bos taurus clone CH240-512E17, WORKING DRAFT SEQUENCE, 19 unordered pieces.
AC230316.1:86490-86507
GGGCCTATAAAACAAGCAAGCCAGTGACAG86490ACCAAACCTGATCACTCGTTATTCCCCTCATCTAGCTCATCTTCCTAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB063A04, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC232510.1:101887-101904
TGTATCTGCTTTCCTTGCGTCCGAAGAAAT101887ACCAAACCTGATCACTCGACGCCATCCTCGACAGCGCTGAGATATAAC
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:389064-389081
TGTATCTGCTTTCCTTGCGTCCGAAGAAAT389064ACCAAACCTGATCACTCGACGCGATCCTCGACAGCGCTGAGATATAAC
Armillaria ostoyae strain C18/9 genome assembly, chromosome: LG4.
LR732078.1:1624165-1624182
TCTGCCATCGTGCACTATTCCGTCTCTGAT1624165ACCAAACCTGATCACTCGAAGAGTAATGTATCCTTCCTACCACTGCAG
Limnephilus lunatus genome assembly, chromosome: 4.
OU830595.1:94651419-94651436
AGCACAACCGGCACAATGCTGAGAGTGGTA94651419ACCAAACCTGATCACTCGGATGATTCGAAAGTTCGTTTATTATTTTCA
Sphaerophoria taeniata genome assembly, chromosome: 1.
OX016540.1:102750059-102750076
TACCCAATTCTGAAAACCAAACCAAACCAA102750059ACCAAACCTGATCACTCGTTAAAGAAAACCCAGCGACAAAGTATTTGC
Anopheles coluzzii genome assembly, chromosome: 2.
OX030891.1:117228250-117228267
GTAGAGTGTAATGTGAGCCCACTCAGCTTG117228250ACCAAACCTGATCACTCGCCGGGCTACAATTAGAACAACAAAAGCGCT
Anopheles gambiae genome assembly, chromosome: 2.
OX030907.1:109456093-109456110
GTAGAGTGTAATGTGAGCCCACTCAGCTTG109456093ACCAAACCTGATCACTCGCCGGGCTACAATTAGAACAACAAAAGCGCT
Bos taurus genome assembly, chromosome: X.
LR962768.1:153143780-153143797
ATAGGAAGATGAGCTAGATGAGGGGAATAA153143780CGAGTGATCAGGTTTGGTCTGTCACTGGCTTGCTTGTTTTATAGGCCC
Bos gaurus x Bos taurus genome assembly, chromosome: X.
OX258984.1:154252358-154252375
ATAGGAAGATGAGCTAGATGAGGGGAATAA154252358CGAGTGATCAGGTTTGGTCTGTCACTGGCTTGCTTGTTTTATAGGCCC
Bos taurus strain mammals genome assembly, chromosome: X.
OX344689.1:171752720-171752737
ATAGGAAGATGAGCTAGATGAGGGGAATAA171752720CGAGTGATCAGGTTTGGTCTGTCACTGGCTTGCTTGTTTTATAGGCCC
Phalacrocorax aristotelis genome assembly, chromosome: 3.
OX451224.1:76794241-76794258
ATCAAAGTCTTCTGCAGCAGTCCCAGTACT76794241CGAGTGATCAGGTTTGGTGTCTGTGAGAGGAATGATATCACACCAACG
odi23h12.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH923697.1:398-415
GTTATATCTCAGCGCTGTCGAGGATCGCGT398CGAGTGATCAGGTTTGGTATTTCTTCGGACGCAAGGAAAGCAGATACA
JBnY027F18F Brassica napus BAC library JBnY Brassica napus genomic clone JBnY027F18, genomic survey sequence.
DU101874.1:733-750
GTTATATCTCAGCGCTGTCGAGGATCGCGT733CGAGTGATCAGGTTTGGTATTTCTTCGGACGCAAGGAAAGCAGATACA
Bos taurus clone CH240-346K6, WORKING DRAFT SEQUENCE, 4 unordered pieces.
AC220773.1:5673-5690
ATAGGAAGATGAGCTAGATGAGGGGAATAA5673CGAGTGATCAGGTTTGGTCTGTCACTGGCTTGCTTGTTTTATAGGCCC
Brassica rapa subsp. pekinensis clone KBrB085F20, complete sequence.
FP340617.1:62844-62861
GTTATATCTCAGCGCTGTCGAGGATGGCGT62844CGAGTGATCAGGTTTGGTATTTCTTCGGACGCAAGGAAAGCAGATACA
Papaver somniferum cultivar Roxanne chromosome 11.
CP048212.1:71123097-71123114
TTGGGTTGCATGGGACACGTTGGTCAACTT71123097CGAGTGATCAGGTTTGGTTTCTGTTTACCTTCCGAACATCTGTCTACT
Papaver somniferum cultivar Roxanne chromosome 5.
CP048217.1:127485818-127485835
TTGGGCTGCATGGGACACGTTGGTCAACTT127485818CGAGTGATCAGGTTTGGTTTCTGTTTACCTTCCGAACATCTGTCTACT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69191244-69191261
GTTATATCTCAGCGCTGTCGAGGATGGCGT69191244CGAGTGATCAGGTTTGGTATTTCTTCGGACGCAAGGAAAGCAGATACA
Brassica napus genome assembly, chromosome: A09.
HG994363.1:53127203-53127220
GTTACATCTCAGCGCTGTCGAGGATGGCGT53127203CGAGTGATCAGGTTTGGTATTTCTTCGGACGCAAGGAAAGCAGATACA
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41282327-41282344
GTTATATCTCAGCGCTGTCGAGGATCGCGT41282327CGAGTGATCAGGTTTGGTATTTCTTCGGACGCAAGGAAAGCAGATACA
Brassica rapa genome, scaffold: A09.
LR031568.1:57297145-57297162
GTTATATCTCAGCGCTGTCGAGGATGGCGT57297145CGAGTGATCAGGTTTGGTATTTCTTCGGACGCAAGGAAAGCAGATACA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50540149-50540166
GTTATATCTCAGCGCTGTCGAGGATCGCGT50540149CGAGTGATCAGGTTTGGTATTTCTTCGGACGCAAGGAAAGCAGATACA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:67821238-67821255
GTTATATCTCAGCGCTGTCGAGGATGGCGT67821238CGAGTGATCAGGTTTGGTATTTCTTCGGACGCAAGGAAAGCAGATACA
Hygrocybe coccinea genome assembly, chromosome: 11.
OY741998.2:1164852-1164869
CTACAAGAGTCCATTTTATACTACTAGTTG1164852CGAGTGATCAGGTTTGGTGGGCAGAAGGTTCCGAGTGCACAGGCATGT
Cheilosia vernalis genome assembly, chromosome: 4.
OX421361.1:28591204-28591221
GGTTCTCGATTAAGATCAATGAACATTCGT28591204CGAGTGATCAGGTTTGGTGCGATGCGCTGTAATTGTGTTTTAGTTTAA
Idaea biselata genome assembly, chromosome: 5.
OY292399.1:28779200-28779217
AGCAAGTACAATTTAGGGGTGTTCAAATAG28779200CGAGTGATCAGGTTTGGTTAGGTTACTGCATGAACTAGCGGTCAAACA
Azorinus chamasolen genome assembly, chromosome: 15.
OY755249.1:66858907-66858924
AGACCCATACCAGACAGTTTCTGTAGTAGC66858907CGAGTGATCAGGTTTGGTCCGGTTTGCTTTTCCAGTTATCTGCCAATG
Anopheles arabiensis genome assembly, chromosome: 1.
OZ001347.1:89507779-89507796
AGCGCTTTTGTTGTTCTAATTGTAGCCCGG89507779CGAGTGATCAGGTTTGGTCAAGCAGAGTGGGCTCACATTACACTCTAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/accaaacctgatcactcg
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : accaaacctgatcactcg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.249 | 0.240 | search_plus_done; http://172.18.8.135:50400/match?q=ACCAAACCTGATCACTCG&k=0&no_gap=0&offset=0&limit=50
0.362 | 0.113 | search_minus_done; http://172.18.8.135:50400/match?q=CGAGTGATCAGGTTTGGT&k=0&no_gap=0&offset=0&limit=36
0.376 | 0.014 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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