GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:36:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mdfwf2085H20_e20613.g1 Apple_EST_Mdfwf Malus domestica cDNA 5' similar to ref|NP_195822.1| expressed protein [Arabidopsis thaliana] pir|T48223 hypothetical protein T7H20.70 - Arabidopsis thaliana emb|
GO547944.1:76-96
AAACAAACTAAATTTACATCCAAATCTTCA76ACCACATTAGAGCAGTTGAGGATGATTAAGTCACTAAACCAAACATCCTTT
Mdfrs3136J10_e7581.b1 Apple_EST_Mdfrs Malus domestica cDNA 3' similar to ref|NP_195822.1| expressed protein [Arabidopsis thaliana] pir|T48223 hypothetical protein T7H20.70 - Arabidopsis thaliana emb|C
GO567555.1:95-115
AAACAAACTAAATTTACATCCAAATCTTCA95ACCACATTAGAGCAGTTGAGGATGATTAAGTCACTAAACCAAACATCCTTT
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:9678211-9678231
AAACAAACTAAATTTACATCCAAATCTTCA9678211ACCACATTAGAGCAGTTGAGGATGATTAAGTCACTAAACCAAACATCCTTT
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:9479585-9479605
AAACAAACTAAATTTACATCCAAATCTTCA9479585ACCACATTAGAGCAGTTGAGGATGATTAAGTCACTAAACCAAACATCCTTT
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:9550650-9550670
AAACAAACTAAATTTACATCCAAATCTTCA9550650ACCACATTAGAGCAGTTGAGGATGATTAAGTCACTAAACCAAACATCCTTT
Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:9762985-9763005
AAACAAACTAAATTAACATCCAAATCTTCA9762985ACCACATTAGAGCAGTTGAGGATGATTAAGTCACTAAACCAAACATCCTTT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:22610225-22610245
AAAGGATGTTTGGTTTAGTGACTTAATCAT22610225CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:23038451-23038471
AAAGGATGTTTGGTTTAGTGACTTAATCAT23038451CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:22729579-22729599
AAAGGATGTTTGGTTTAGTGACTTAATCAT22729579CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:21284106-21284126
AAAGGATGTTTGGTTTAGTGACTTAATCAT21284106CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT
Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:22395348-22395368
AAAGGATGTTTGGTTTAGTGACTTAATCAT22395348CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT
Malus domestica genome assembly, chromosome: 12.
OU696688.1:22369773-22369793
AAAGGATGTTTGGTTTAGTGACTTAATCAT22369773CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT
Malus domestica genome assembly, chromosome: 12.
OU744553.1:22524770-22524790
AAAGGATGTTTGGTTTAGTGACTTAATCAT22524770CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT
Malus domestica genome assembly, chromosome: 12.
OU744964.1:22003540-22003560
AAAGGATGTTTGGTTTAGTGACTTAATCAT22003540CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/accacattagagcagttgagg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : accacattagagcagttgagg | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.268 | 0.259 | search_plus_done; http://172.18.8.135:50400/match?q=ACCACATTAGAGCAGTTGAGG&k=0&no_gap=0&offset=0&limit=50
0.304 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=CCTCAACTGCTCTAATGTGGT&k=0&no_gap=0&offset=0&limit=44
0.309 | 0.005 | cgi_end;

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