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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
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2025-04-03 15:01:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

HO01D12w HO Hordeum vulgare cDNA clone HO01D12 3-PRIME, mRNA sequence.
CK565706.1:261-281
CCAAGCACAGGGATAAGCGAAATCGATTTA261ACGCCCTCATCATCTTGGTTCGAGCTCCGTGAGTGACACCTCGTTCACTGA
HO02N04w HO Hordeum vulgare cDNA clone HO02N04 3-PRIME, mRNA sequence.
CK566210.1:119-139
CCAAGCACAGGGATAAGCGAAATCGATTTA119ACGCCCTCATCATCTTGGTTCGAGCTCCGTGAGTGACACCTCGTTCACTGA
HO09C03w HO Hordeum vulgare cDNA clone HO09C03 3-PRIME, mRNA sequence.
CK568167.1:111-131
CCAAGCACAGGGATAAGCGAAATCGATTTA111ACGCCCTCATCATCTTGGTTCGAGCTCCGTGAGTGACACCTCGTTCACTGA
HO31K09w HO Hordeum vulgare cDNA clone HO31K09 3-PRIME, mRNA sequence.
DN185833.1:314-334
CCAAGCACAGGGATAAGCGAAATCGATTTA314ACGCCCTCATCATCTTGGTTCGAGCTCCGTGAGTGACACCTCGTTCACTGA
HO30H15w HO Hordeum vulgare cDNA clone HO30H15 3-PRIME, mRNA sequence.
DN186103.1:190-210
CCAAGCACAGGGATAAGCGAAATCGATTTA190ACGCCCTCATCATCTTGGTTCGAGCTCCGTGAGTGACACCTCGTTCACTGA
BG01015A1D03.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG01015A1D03.r1, mRNA sequence.
EG380435.1:179-199
CGATGGACACCGCAAGTTTGGGTTTAACGT179ACGCCCTCATCATCTTGGTTCGAGCTCAGTGAGAGACACCTCGTTCGGCGA
HDP40H20T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP40H20, mRNA sequence.
EX585793.1:92-112
CCAAGCACAGGGATAAGCGAAATCGATTTA92ACGCCCTCATCATCTTGGTTCGAGCTCCGTGAGTGACACCTCGTTCACTGA
HDP11C04T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP11C04, mRNA sequence.
EX598171.1:207-227
CCAAGCACAGGGATAAGCGAAATCGATTTA207ACGCCCTCATCATCTTGGTTCGAGCTCCGTGAGTGACACCTCGTTCACTGA
BG04063B2C06.r1 BG04- primary and normalized libraries Dactylis glomerata cDNA, mRNA sequence.
HO146993.1:318-338
GTGGGTTCAACATCGCAAGTCTGGGTTCAA318ACGCCCTCATCATCTTGGTTCTAGCTCCGTGAGCGACCCCTC
Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP23-35A22.
CT009768.1:111607-111627
TGTATAGTGGAGTGCTATGCTCACTCAGCC111607ACGCCCTCATCATCTTGGTTCTAGGGTACTATTACTGTTGGCATAACTGCA
Mus musculus BAC clone RP24-75N14 from chromosome 17, complete sequence.
AC165953.3:83366-83386
TGCAGTTATGCCAACAGTAATAGTACCCTA83366GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus genome assembly, chromosome: 17.
OW971559.1:167625-167645
TGCAGTTATGCCAACAGTAATAGTACCCTA167625GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus genome assembly, chromosome: 17.
OW971590.1:151672-151692
TGCAGTTATGCCAACAGTAATAGTACCCTA151672GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus genome assembly, chromosome: 17.
OW971611.1:348360-348380
TGCAGTTATGCCAACAGTAATAGTACCCTA348360GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus domesticus genome assembly, chromosome: 17.
OW971633.1:196787-196807
TGCAGTTATGCCAACAGTAATAGTACCCTA196787GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus genome assembly, chromosome: 17.
OW971653.1:174469-174489
TGCAGTTATGCCAACAGTAATAGTACCCTA174469GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus molossinus genome assembly, chromosome: 17.
OW971674.1:233248-233268
TGCAGTTATGCCAACAGTAATAGTACCCTA233248GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus genome assembly, chromosome: 17.
OW971707.1:200414-200434
TGCAGTTATGCCAACAGTAATAGTACCCTA200414GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus genome assembly, chromosome: 17.
OW971737.1:166385-166405
TGCAGTTATGCCAACAGTAATAGTACCCTA166385GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus genome assembly, chromosome: 17.
OW971758.1:162574-162594
TGCAGTTATGCCAACAGTAATAGTACCCTA162574GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus musculus genome assembly, chromosome: 17.
OW971779.1:265363-265383
TGCAGTTATGCCAACAGTAATAGTACCCTA265363GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus genome assembly, chromosome: 17.
OW971800.1:134297-134317
TGCAGTTATGCCAACAGTAATAGTACCCTA134297GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus genome assembly, chromosome: 17.
OW971821.1:255301-255321
TGCAGTTATGCCAACAGTAATAGTACCCTA255301GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus castaneus genome assembly, chromosome: 17.
OW971833.1:207456-207476
TGCAGTTATGCCAACAGTAATAGTACCCTA207456GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus genome assembly, chromosome: 17.
OW971852.1:134610-134630
TGCAGTTATGCCAACAGTAATAGTACCCTA134610GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Apodemus sylvaticus genome assembly, chromosome: 23.
OX359320.1:37395293-37395313
ATAGGCAGTTACGCCAACAATAATAGCCTA37395293GAACCAAGATGATGAGGGCGTGGCTGAGGGAGCACAGCGCTGCGATATATT
Mus musculus genome assembly, chromosome: 17.
OX389811.1:3655214-3655234
TGCAGTTATGCCAACAGTAATAGTACCCTA3655214GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus genome assembly, chromosome: 17.
OX390160.1:1364299-1364319
TGCAGTTATGCCAACAGTAATAGTACCCTA1364299GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Mus musculus genome assembly, chromosome: 17.
OX439030.1:6020016-6020036
TGCAGTTATGCCAACAGTAATAGTACCCTA6020016GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
Sequence 24351 from patent US 10900036.
MX325045.1:308-328
TGCAGTTATGCCAACAGTAATAGTACCCTA308GAACCAAGATGATGAGGGCGTGGCTGAGTGAGCATAGCACTCCACTATACA
HO15N03S HO Hordeum vulgare cDNA clone HO15N03 5-PRIME, mRNA sequence.
CD057667.1:304-324
TCAGTGAACGAGGTGTCACTCACGGAGCTC304GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
GBN003D06f GBN Hordeum vulgare cDNA clone GBN003D06 3-PRIME, mRNA sequence.
CX632699.1:193-213
TCAGTGAACGAGGTGTCACTCACGGAGCTC193GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
HDP40H20w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP40H20, mRNA sequence.
EX585794.1:410-430
TCAGTGAACGAGGTGTCACTCACGGAGCTC410GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
HDP11C04w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP11C04, mRNA sequence.
EX598172.1:546-566
TCAGTGAACGAGGTGTCACTCACGGAGCTC546GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
BG04063B2C06.f1 BG04- primary and normalized libraries Dactylis glomerata cDNA, mRNA sequence.
HO150724.1:17-37
GTCGCTCACGGAGCTA17GAACCAAGATGATGAGGGCGTTTGAACCCAGACTTGCGATGTTGAACCCAC
r_004c_c08 Lolium perenne r Lolium perenne cDNA, mRNA sequence.
JZ165760.1:518-538
TCACCGAACGAGGTGTCGCTCACGGAGCTC518GAACCAAGATGATGAGGGCGTTGAACCCAAACTTGCAATGTCGATCGCGTA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR824637.1:5021207-5021227
TCAGTGAACGAGGTGTCACTCACGGAGCTC5021207GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828092.1:5249636-5249656
TCAGTGAACGAGGTGTCACTCACGGAGCTC5249636GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828120.1:4165535-4165555
TCAGTGAACGAGGTGTCACTCACGGAGCTC4165535GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828151.2:3264479-3264499
TCAGTGAACGAGGTGTCACTCACGGAGCTC3264479GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828193.1:4009744-4009764
TCAGTGAACGAGGTGTCACTCACGGAGCTC4009744GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Triticum aestivum genome assembly, chromosome: 7A.
LR865476.1:11727922-11727942
TCGCCCAACGACTTGTCCCTCACAGAGCTC11727922GAACCAAGATGATGAGGGCGTTGAACCTGAATTCTTGGTGTCCATCGCATA
Triticum aestivum genome assembly, chromosome: 7A.
OU015739.1:12103528-12103548
TCGCCCAACGACTTGTCCCTCACAGAGCTC12103528GAACCAAGATGATGAGGGCGTTGAACCTGAATTCTTGGTGTCCATCGCATA
Avena sativa genome assembly, chromosome: 2A.
OU342379.1:5681387-5681407
GCGCATACTCTTGTCTGTCTCCTGGATCTC5681387GAACCAAGATGATGAGGGCGTTGAACCAAGACTTGCGCGCTGTTGATGATC
Avena atlantica genome assembly, chromosome: 6A.
OU342738.1:10594903-10594923
GCGCATACTCTTGTCTGTCTCCTGGATCTC10594903GAACCAAGATGATGAGGGCGTTGAACCAAGACTTGCGCTGTTGATCGCTTA
Avena sativa genome assembly, chromosome: 2.
OV702280.1:5953060-5953080
GCGCATACTCTTGTCTGTCTCCTGGATCTC5953060GAACCAAGATGATGAGGGCGTTGAACCAAGACTTGCGCGCTGTTGATGATC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
OX459907.1:5923111-5923131
TCAGTGAACGAGGTGTCACTCACGGAGCTC5923111GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
Hordeum vulgare genome assembly, chromosome: 6H.
OX459921.1:6437354-6437374
TCAGTGAACGAGGTGTCACTCACGGAGCTC6437354GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX459975.1:8552813-8552833
TCAGTGAACGAGGTGTCACTCACGGAGCTC8552813GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
OX459982.1:6612065-6612085
TCAGTGAACGAGGTGTCACTCACGGAGCTC6612065GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
Hordeum vulgare genome assembly, chromosome: 6H.
OX459989.1:7229929-7229949
TCAGTGAACGAGGTGTCACTCACGGAGCTC7229929GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX460031.1:5887319-5887339
TCAGTGAACGAGGTGTCACTCACGGAGCTC5887319GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX460045.1:5316978-5316998
TCAGTGAACGAGGTGTCACTCACGGAGCTC5316978GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX460087.1:5546225-5546245
TCAGTGAACGAGGTGTCACTCACGGAGCTC5546225GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX460094.1:6755982-6756002
TCAGTGAACGAGGTGTCACTCACGGAGCTC6755982GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460100.1:8755244-8755264
TCAGTGAACGAGGTGTCACTCACGGAGCTC8755244GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460122.1:5950091-5950111
TCAGTGAACGAGGTGTCACTCACGGAGCTC5950091GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460136.1:6538430-6538450
TCAGTGAACGAGGTGTCACTCACGGAGCTC6538430GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX590746.1:5655783-5655803
TCAGTGAACGAGGTGTCACTCACGGAGCTC5655783GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX590753.1:7392661-7392681
TCAGTAAACGAGGTGTCACTCACGGAGCTC7392661GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
Hordeum vulgare genome assembly, chromosome: 6H.
OX638754.1:6774487-6774507
TCAGTGAACGAGGTGTCACTCACGGAGCTC6774487GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Hordeum vulgare genome assembly, chromosome: 6H.
OX638754.1:6840029-6840049
TCAGTGAACGAGGTGTCACTCACGGAGCTC6840029GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Hordeum vulgare genome assembly, chromosome: 6H.
OX638761.1:6160481-6160501
TCAGTGAACGAGGTGTCACTCACGGAGCTC6160481GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638817.1:5885881-5885901
TCAGTGAACGAGGTGTCACTCACGGAGCTC5885881GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTTATCCCTGTGCTTGG
Hordeum vulgare genome assembly, chromosome: 6H.
OX638824.1:6967767-6967787
TCAGTGAACGAGGTGTCACTCACGGAGCTC6967767GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638873.1:6085252-6085272
TCAGTGAACGAGGTGTCACTCACGGAGCTC6085252GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638880.1:9089690-9089710
TCAGTGAACGAGGTGTCACTCACGGAGCTC9089690GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638880.1:9123484-9123504
TCAGTGAACGAGGTGTCACTCACGGAGCTC9123484GAACCAAGATGATGAGGGCGTTAAATCGATTTCGCTCATCCCTGTGCTTGG
Triticum monococcum genome assembly, chromosome: 7A.
OY737856.1:8866503-8866523
TCGCCCAACGACTTGTCCCTCACAGAGCTC8866503GAACCAAGATGATGAGGGCGTTGAACCTGAATTCTTGGTGTCCATCGCATA
Triticum monococcum genome assembly, chromosome: 7A.
OY737864.1:10471234-10471254
TCGCCCAACGACTTGTCCCTCACAGAGCTC10471234GAACCAAGATGATGAGGGCGTTGAACCTGAATTCTTGGTGTCCATCGCATA
Triticum timopheevii genome assembly, chromosome: 7At.
OY997273.1:15188121-15188141
TCGCCCAACGACTTGTCCCTCACAGAGCTC15188121GAACCAAGATGATGAGGGCGTTGAACCTGAATTCTTGGTGTCCATCGCATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/acgccctcatcatcttggttc
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : acgccctcatcatcttggttc | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.573 | 0.564 | search_plus_done; http://172.18.8.135:50400/match?q=ACGCCCTCATCATCTTGGTTC&k=0&no_gap=0&offset=0&limit=50
1.098 | 0.524 | search_minus_done; http://172.18.8.135:50400/match?q=GAACCAAGATGATGAGGGCGT&k=0&no_gap=0&offset=0&limit=40
1.138 | 0.041 | cgi_end;

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