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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 22:07:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS12066B07 KS12 Capsicum annuum cDNA, mRNA sequence.
CA526129.1:166-189
TTCGCGCTACGTGTAGGGCGACCCCGAATT166ACTCCCTATGTGTCTCAACCCTACAATCCGATCCACGTAGCTCCGAGGCGCATG
1871 CM334 Root cDNA Capsicum annuum cDNA clone RR41-70, mRNA sequence.
EB084617.1:190-213
TTCGTGCTACGTGTAGGGCGACCCCGAATT190ACTCCCTATGTGTCTCAACCCTACAATCCGATCCACGTAGCTACGAGGCGCATG
KS16023A06 KS16 Capsicum annuum cDNA, mRNA sequence.
GD071551.1:64-87
TTCGTGCTACGTGTAGGGCGACCCCGAATT64ACTCCCTATGTGTCTCAACCCTACAATCCGATCCACGTAGCTACGAGGCGCATG
KS16025G04 KS16 Capsicum annuum cDNA, mRNA sequence.
GD071812.1:189-212
TTCGTGCTACGTGTAGGGCGACCCCGAATT189ACTCCCTATGTGTCTCAACCCTACAATCCGATCCACGTAGCTACGAGGCGCATG
KS21006D09 KS21 Capsicum annuum cDNA, mRNA sequence.
GD099729.1:132-155
TTCGTGCTACGTGTAGGGCGACCCCGAATT132ACTCCCTATGTGTCTCAACCCTACAATCCGATCCACGTAGCTACGAGGCGCATG
KS21013E20 KS21 Capsicum annuum cDNA, mRNA sequence.
GD100381.1:153-176
TTCGTGCTACGTGTAGGGCGACCCCGAATT153ACTCCCTATGTGTCTCAACCCTACAATCCGATCCACGTAGCTACGAGGCGCATG
KS21013I22 KS21 Capsicum annuum cDNA, mRNA sequence.
GD100405.1:198-221
TTCGCGCTACGTGTAGGGCGACCCCGAATT198ACTCCCTATGTGTCTCAACCCTACAATCCGATCCACGTAGCTACGAGGCGCATG
KS21049I18 KS21 Capsicum annuum cDNA, mRNA sequence.
GD103598.1:153-176
TTCGTGCTACGTGTAGGGCGACCCCGAATT153ACTCCCTATGTGTCTCAACCCTACAATCCGATCCACGTAGCTACGAGGCGCATG
KS21060E11 KS21 Capsicum annuum cDNA, mRNA sequence.
GD104537.1:198-221
TTCGCGCTACGTGTAGGGCGACCCCGAATT198ACTCCCTATGTGTCTCAACCCTACAATCCGATCCACGTAGCTACGAGGCGCATG
CS01003H01 Hotpepper under oxidative stress Capsicum annuum cDNA 5', mRNA sequence.
GO345450.1:181-204
TTCGTGCTACGTGTAGGGCGACCCCGAATT181ACTCCCTATGTGTCTCAACCCTACAATCCGATCCACGTAGCTACGAGGCGCATG
CS01016C11 Hotpepper under oxidative stress Capsicum annuum cDNA 5', mRNA sequence.
GO345608.1:194-217
TTCGTGCTACGTGTAGGGCGACCCCGAATT194ACTCCCTATGTGTCTCAACCCTACAATCCGATCCACGTAGCTACGAGGCGCATG
Capsicum annuum Takanotsume DNA, chromosome 12, sequence.
AP026707.1:254899060-254899083
TTCGCGCTACGTGTAGGGCGACCCCGAATT254899060ACTCCCTATGTGTCTCAACCCTACAATCCGATCCACGTAGCTACGAGGCGCATG
TSA: Capsicum annuum MGMT_Contig15860, mRNA sequence.
JW066104.1:1115-1138
CATGCGCCTCGTAGCTACGTGGATCGGATT1115GTAGGGTTGAGACACATAGGGAGTAATTCGGGGTCGCCCTACACGTAGCGCGAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 12.
CP124720.1:7882886-7882909
CATGCGCCTCGTAGCTACGTGGATCGGATT7882886GTAGGGTTGAGACACATAGGGAGTAATTCGGGGTCGCCCTACACGTAGCGCGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/actccctatgtgtctcaaccctac
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : actccctatgtgtctcaaccctac | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.802 | 0.794 | search_plus_done; http://172.18.8.135:50400/match?q=ACTCCCTATGTGTCTCAACCCTAC&k=0&no_gap=0&offset=0&limit=50
0.838 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=GTAGGGTTGAGACACATAGGGAGT&k=0&no_gap=0&offset=0&limit=38
0.839 | 0.001 | cgi_end;

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