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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:52:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

43567.3 Common Scab-Challenged Tubers Solanum tuberosum cDNA clone 43567 3', mRNA sequence.
DN922689.1:553-576
CGTGTTGTTACGGATGTAGAAGAGGTGAGA553AGAAAGGAACTGATACAACTTGGCTAGTCGATGCTGTGGACTGTGGAGCAGTAA
KR3B.109I17F.051111T7 KR3B Nicotiana tabacum cDNA clone KR3B.109I17, mRNA sequence.
DW004719.1:101-124
CGTGCTGCTACGGATGTAGAAGAGGTGAGA101AGAAAGGAACTGATACAACTTGGCTGGTGGATGCTGTGGACAGTGGAGCTGTGA
Solanum lycopersicum Micro-Tom DNA, chromosome 9, draft genome sequence.
AP028943.1:67338637-67338660
CGTGTTGTTATGGATGTAGAAGAGGTGAGA67338637AGAAAGGAACTGATACAACTTGGCTAGTCGATGCTGTGGACTGTGGAGCTGTGA
Solanum lycopersicum cultivar I-3 chromosome 9.
CP023765.1:69866518-69866541
CGTGTTGTTATGGATGTAGAAGAGGTGAGA69866518AGAAAGGAACTGATACAACTTGGCTAGTCGATGCTGTGGACTGTGGAGCTGTGA
Solanum pinnatisectum cultivar CGN17745 chromosome 9.
CP047560.1:56637918-56637941
CATGTTGTTACGGATGTAGAAGAGGTGAGA56637918AGAAAGGAACTGATACAACTTGGCTAGTCGATGCTGTGGACTGTGGGGCAGTGA
Solanum tuberosum cultivar Solyntus chromosome 9.
CP055242.1:66159402-66159425
CGTGTTGTTACGGATGTAGAAGAGGTGAGA66159402AGAAAGGAACTGATACAACTTGGCTAGTCGATGCTGTGGACTGTGGAGCAGTGA
Jasminum sambac cultivar Hutoumoli linkage group Lg6.
CP073649.1:26656295-26656318
CTTGCTGTTACGGGTGTATCAGAGGAGACA26656295AGAAAGGAACTGATACAACTTGGCTAGTTGATGCTGTAAATTGTGGAGCAGTGA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:273438060-273438083
CGTGCTGCTACGGATGTAGAAGAGGTGATA273438060AGAAAGGAACTGATACAACTTGGCTGGTCGATGCTGTGGACTGTGGAGCAGTGA
Solanum verrucosum cultivar 11H23 chromosome 9.
CP133620.1:55762407-55762430
CGTGTTGTTACGGATGTAGAAGAGGTGAGA55762407AGAAAGGAACTGATACAACTTGGCTAGTCGATGCTGTGGACTGTGGAGCAGTAA
Solanum pennellii chromosome ch09, complete genome.
HG975448.1:81431832-81431855
CGTGTTGTTATGGATGTAGAAGAGGTGAGA81431832AGAAAGGAACTGATACAACTTGGCTAGTCGATGCTGTGGACTGTGGAGCTGTGA
Solanum lycopersicum chromosome ch09, complete genome.
HG975521.1:65213822-65213845
CGTGTTGTTATGGATGTAGAAGAGGTGAGA65213822AGAAAGGAACTGATACAACTTGGCTAGTCGATGCTGTGGACTGTGGAGCTGTGA
Solanum lycopersicum genome assembly, chromosome: 9.
OU640352.1:80683354-80683377
CGTGTTGTTATGGATGTAGAAGAGGTGAGA80683354AGAAAGGAACTGATACAACTTGGCTAGTCGATGCTGTGGACTGTGGAGCTGTGA
Solanum dulcamara genome assembly, chromosome: 3.
OX359254.1:78874197-78874220
CGTGCTGTTACGGATGTAGAAGAGGCGAGA78874197AGAAAGGAACTGATACAACTTGGCTGGTGGATGCTGTGGACTGTGGAGCAGTGA
TSA: Capsicum annuum MGMT_Contig8887, mRNA sequence.
JW059131.1:1209-1232
TCACTGCTCCACAGTCCACAGCATCGACCA1209GCCAAGTTGTATCAGTTCCTTTCTTATCACCTCTTCTACATCCGTAGCAGCACG
POTH757TR Solanum tuberosum RHPOTKEY BAC ends Solanum tuberosum genomic clone RHPOTKEY065_J18, genomic survey sequence.
EI827770.1:523-546
TCACTGCTCCACAGTCCACAGCATCGACTA523GCCAAGTTGTATCAGTTCCTTTCTTCTCACCTCTTCTACATCCGTAACAACACG
POTEV67TR Solanum tuberosum RHPOTKEY BAC ends Solanum tuberosum genomic clone RHPOTKEY044_L14, genomic survey sequence.
EI839757.1:102-125
TCACTGCTCCACAGTCCACAACATCAACTA102GCCAAGTTGTATCAGTTCCTTTCTTCTCACCTCTTCTACATCCGTAACAACACG
Solanum lycopersicum DNA, clone: MTBAC061D23_SP6.
FT264291.1:584-607
TCACAGCTCCACAGTCCACAGCATCGACTA584GCCAAGTTGTATCAGTTCCTTTCTTCTCACCTCTTCTACATCCATAACAACACG
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:19297152-19297175
TCACTGCTCCACAGTCCACAGCATCGACCA19297152GCCAAGTTGTATCAGTTCCTTTCTTATCACCTCTTCTACATCCGTAGCAGCACG
Fraxinus pennsylvanica genome assembly, chromosome: 11.
OU503046.1:13548587-13548610
TCACTGCACCACAATTTACAGCATCAACCA13548587GCCAAGTTGTATCAGTTCCTTTCTTGTCTCCTCTAATACATCCATAACAGCAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/agaaaggaactgatacaacttggc
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : agaaaggaactgatacaacttggc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.297 | 0.289 | search_plus_done; http://172.18.8.135:50400/match?q=AGAAAGGAACTGATACAACTTGGC&k=0&no_gap=0&offset=0&limit=50
0.515 | 0.218 | search_minus_done; http://172.18.8.135:50400/match?q=GCCAAGTTGTATCAGTTCCTTTCT&k=0&no_gap=0&offset=0&limit=37
0.520 | 0.004 | cgi_end;

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