GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:02:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOT01-19M21TR BOT01 Brassica oleracea genomic clone BOT01-19M21, genomic survey sequence.
FI687983.1:114-134
AGAAGCCTTCTTCTTCTTTGAAGAAGAAAA114AGAAGATCCGCCGTGTTTAGCAACGCTGCTCAGCTTTTTGTCGTCGCTCTG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41587324-41587344
AGAAGCCTTCTTCTTCTTTGAAGAAGAAAA41587324AGAAGATCCGCCGTGTTTAGCAACGCTGCTCAGCTTTTTGTCGTCGCTCTG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50825088-50825108
AGAAGCCTTCTTCTTCTTTGAAGAAGAAAA50825088AGAAGATCCGCCGTGTTTAGCAACGCTGCTCAGCTTTTTGTCGTCGCTCTG
94-E023032-021-019-L23-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022L2319Q, mRNA sequence.
CX187798.1:202-222
CAGAGCGACGACAAAAAGCTGAGCAGCGTT202GCTAAACACGGCGGATCTTCTTTTTCTTCTTCAAAGAAGAAGAAGGCTTCT
BNSCS5CT_UP_173_A10_01JUN2007_080 Brassica napus BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EV090331.1:217-237
CAGAGCGACGACAAAAAGCTGAGCAGCGTT217GCTAAACACGGCGGATCTTCTTTTTCTTCTTCAAAGAAGAAGAAGGCTTCT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:71610-71630
CAGAGCGACGACAAAAAGCTGAGCAGCGTT71610GCTAAACACGGCGGATCTTCTTTTTCTTCTTCAAAGAAGAAGAAGGCTTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/agaagatccgccgtgtttagc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : agaagatccgccgtgtttagc | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.160 | 0.151 | search_plus_done; http://172.18.8.135:50400/match?q=AGAAGATCCGCCGTGTTTAGC&k=0&no_gap=0&offset=0&limit=50
0.275 | 0.115 | search_minus_done; http://172.18.8.135:50400/match?q=GCTAAACACGGCGGATCTTCT&k=0&no_gap=0&offset=0&limit=47
0.277 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).