GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:21:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KF8C.108N14F.051215T7 KF8 Nicotiana tabacum cDNA clone KF8C.108N14, mRNA sequence.
EB427035.1:322-346
TGCATCAGAGGAACCGAAAATCCCACTTCC322AGAATGGGTTTCTCGGATTGGTGAATCTGACCCTAGTATCTTCTTTAAGGATCGG
KN6B.100P14F.051019T7 KN6B Nicotiana tabacum cDNA clone KN6B.100P14, mRNA sequence.
EB438507.1:698-722
CGCGTCAGAGGAACCGAAAATCCCACTTCC698AGAATGGGTTTCTCGGATTGGTGAATCTGACCCTAGTATCTTC
KN6B.101F23F.051230T7 KN6B Nicotiana tabacum cDNA clone KN6B.101F23, mRNA sequence.
EB438658.1:31-55
TGCATCAGAGGAACCGAAAATCCCACTTCC31AGAATGGGTTTCTCGGATTGGTGAATCTGACCCTAGTATCTTCTTTAAGGATCGG
CHO_SL007xl04f1.ab1 CHO_SL Nicotiana tabacum cDNA, mRNA sequence.
EH620837.1:700-724
CGCGTCAGAGGAACTGAAAATCCTACTTCT700AGAATGGGTTTCTCGGATTGGTGAATCTGACCCTAGTATCTTCTTTAAGGACCGT
AGN_RPC019xb14f1.ab1 AGN_RPC Nicotiana tabacum cDNA 5', mRNA sequence.
FG143407.1:679-703
ACGCGTCAGAGGAACCGAAATCCCACTTCC679AGAATGGGTTTCTCGGATTGGTGAATCTGACCCTAGTATCTTCTTTAAGACCGTT
AGN_RNC009xo09f1.ab1 AGN_RNC Nicotiana tabacum cDNA 5', mRNA sequence.
FG166211.1:227-251
CGCGTCAGAGGAACCGAAAATCCCACTTCC227AGAATGGGTTTCTCGGATTGGTGAATCTGACCCTAGTATCTTCTTTAAGGACCGT
AGN_RNC124xb23f1.ab1 AGN_RNC Nicotiana tabacum cDNA 5', mRNA sequence.
FG174357.1:604-628
TGCATCAGAGGAACCGAAAATCCCACTTCC604AGAATGGGTTTCTCGGATTGGTGAATCTGACCCTAGTATCTTCTTTAAGATCGGT
AGN_PNL216bf1_b1.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 5', mRNA sequence.
FG190343.1:653-677
CGCGTCAGAGGAACCGAAAATCCCACTTCC653AGAATGGGTTTCTCGGATTGGTGAATCTGACCCTAGTATCTTCTTTTAGGACCGT
KS20001E07 KS20 Capsicum annuum cDNA, mRNA sequence.
GD093418.1:72-96
TGCATCAGAGGAAGCGAAAATTCCACTCCC72AGAATGGGTTTCTCGGATTGGTGAAACTGATCCTAGTATCTTTTTTAAAAACGGA
KS21011P12 KS21 Capsicum annuum cDNA, mRNA sequence.
GD100253.1:177-201
TGCATCAGAGGAAGCGAAAATTCCACTCCC177AGAATGGGTTTCTCGGATTGGTGAAACTGATCCTAGTATCTTTTTTAAAAACGGA
M04202281_BAI-73_M13- Hyacinth Bean drought stressed cDNA SSH library RS Lablab purpureus cDNA clone M04202281_BAI-73_M13-, mRNA sequence.
JZ151004.1:126-150
TGCATCAGAGGTACCGAAAATCCCACTCCC126AGAATGGGTTTCTCGGATTGGTGAATCTAATCCTAGTATCTTCTTTAAAGACGGA
NSYL9829 Nicotiana sylvestris normalized full-length cDNA Library Nicotiana sylvestris cDNA 5', mRNA sequence.
JZ953009.1:485-509
TGCATCAGAGGAACCGAAAATCCCACTTCC485AGAATGGGTTTCTCGGATTGGTGAATCTGACCCTAGTATCTTCTTTAAGGATCGG
NSYL10733 Nicotiana sylvestris normalized full-length cDNA Library Nicotiana sylvestris cDNA 5', mRNA sequence.
JZ957398.1:667-691
TGCATCAGAGGAACCGAAAATCCCACTTCC667AGAATGGGTTTCTCGGATTGGTGAATCTGACCCTAGTATCTTCTTTAAGGATCGG
Nicotiana tabacum 1,4-alpha-glucan-maltohydrolase mRNA, complete cds.
KJ808738.1:540-564
TGCATCAGAGGAACCGAAAATCCCACTTCC540AGAATGGGTTTCTCGGATTGGTGAATCTGACCCTAGTATCTTCTTTAAGGATCGG
TSA: Capsicum annuum MGMT_Contig3633, mRNA sequence.
JW053877.1:1379-1403
TCCGTTTTTAAAAAAGATACTAGGATCAGT1379TTCACCAATCCGAGAAACCCATTCTGGGAGTGGAATTTTCGCTTCCTCTGATGCA
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:236250852-236250876
TCCGTTTTTAAAAAAGATACTAGGATCAGT236250852TTCACCAATCCGAGAAACCCATTCTGGGAGTGGAATTTTCGCTTCCTCTGATGCA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 1.
CP124731.1:235660231-235660255
TCCGTTTTTAAAAAAGATACTAGGATCAGT235660231TTCACCAATCCGAGAAACCCATTCTGGGAGTGGAATTTTCGCTTCCTCTGATGCA
Solanum dulcamara genome assembly, chromosome: 4.
OX359255.1:31216743-31216767
TTGATCTTTAAAGAAGATACTAGGATCAGA31216743TTCACCAATCCGAGAAACCCATTCTGGGAGTGGAATTTTCGCTTCCTCTGATGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/agaatgggtttctcggattggtgaa
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : agaatgggtttctcggattggtgaa | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.944 | 0.936 | search_plus_done; http://172.18.8.135:50400/match?q=AGAATGGGTTTCTCGGATTGGTGAA&k=0&no_gap=0&offset=0&limit=50
1.010 | 0.065 | search_minus_done; http://172.18.8.135:50400/match?q=TTCACCAATCCGAGAAACCCATTCT&k=0&no_gap=0&offset=0&limit=36
1.012 | 0.003 | cgi_end;

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