GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-12 12:34:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 9.
CP141918.1:6610809-6610828
AGGCTTACAACATCGACAACCACAAGGGGT6610809AGAGCTTCGAGCTTCGTTTGCCTTTTTCTCCGATCAGATCTCGTTCTCTC
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:6137457-6137476
ACAAGTTACAACATCGACAACCATATGGGT6137457AGAGCTTCGAGCTTCGTTTGCCTTTCTCTCCGATCAGATCTCGCTCCTTC
Malus hybrid cultivar cultivar Flame chromosome 9.
CP141935.1:6274269-6274288
AGGCTTACAACATCGACAACCACAAGGGGT6274269AGAGCTTCGAGCTTCGTTTGCCTTTTTCTCCGATCAGATCTCGTTCTCTC
Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141958.1:6480806-6480825
AGGCTTACAACATCGACAACCACAAGGGGT6480806AGAGCTTCGAGCTTCGTTTGCCTTTTTCTCCGATCAGATCTCGTTCTCTC
Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141975.1:6537191-6537210
AGGCTTACAACATCGACAACCACAAGGGGT6537191AGAGCTTCGAGCTTCGTTTGCCTTTTTCTCCGATCAGATCTCGTTCTCTC
Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143377.1:20207234-20207253
AGGCTTACAACATCGACAACCACAAGGGGT20207234AGAGCTTCGAGCTTCGTTTGCTTTTCTCTACGATTAGATCTCGTTCCTTC
Malus x robusta genome assembly, chromosome: 11.
OY720335.1:5931403-5931422
ACAAGTTACAACATCGACAACCATATGGGT5931403AGAGCTTCGAGCTTCGTTTGCCTTTCTCTCCGATCAGATCTCGCTCCTTC
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:25271062-25271081
AGGCTTACAACATCGACAACCATAAGGGGT25271062AGAGCTTCGAGCTTCGTTTGTTTTCTCTATGATCAGATCTCGTTCTTTCT
Callimorpha dominula genome assembly, chromosome: 28.
OX457018.1:6829954-6829973
TTGCCATATCCGTTCATGGATTGATAGCCA6829954AGAGCTTCGAGCTTCGTTTGACGGTTGGATCAAGAGACTGATGCAGAAGT
Malus hybrid cultivar cultivar Royalty chromosome 3.
CP141972.1:16434816-16434835
AAAGGAACGAGATCTAATCGTAGAGAAAAG16434816CAAACGAAGCTCGAAGCTCTACCCCATGTTGTTGTCGATGTTGTAAGCCT
Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143366.1:29187225-29187244
GAGAGAACGAGATCTGATCGGAGAAAAAGG29187225CAAACGAAGCTCGAAGCTCTACCCCTTGTGGTTGTCGATGTTGTAAGCCT
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143374.1:28293514-28293533
GAAGGAGCGAGATCTGATCGGAGAGAAAGG28293514CAAACGAAGCTCGAAGCTCTACCCATATGGTTGTCGATGTTGTAACTTGT
Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143383.1:27633778-27633797
CAGAGAACGAGATCTGATCGGAGAGAAAGG27633778CAAACGAAGCTCGAAGCTCTACCCCTTGTGGTTGTCGATGTTGTAAGCCT
Malus sylvestris genome assembly, chromosome: 9.
OU696511.1:28701472-28701491
GAGAGAACGAGATCTGATCGGAGAAAAAGG28701472CAAACGAAGCTCGAAGCTCTACCCCTTGTGGTTGTCGATGTTGTAAGCCT
Malus sylvestris genome assembly, chromosome: 17.
OU696519.1:28216765-28216784
GAAGGAGCGAGATCTGATCGGAGAGAAAGG28216765CAAACGAAGCTCGAAGCTCTACCCATATGGTTGTCGATGTTGTAACTTGT
Malus domestica genome assembly, chromosome: 9.
OU696685.1:29682737-29682756
GAGAGAACGAGATCTGATCGGAGAAAAAGG29682737CAAACGAAGCTCGAAGCTCTACCCCTTGTGGTTGTCGATGTTGTAAGCCT
Malus domestica genome assembly, chromosome: 17.
OU696693.1:27818128-27818147
GAAGGAGCGAGATCTGATCGGAGAGAAAGG27818128CAAACGAAGCTCGAAGCTCTACCCATATGGTTGTCGATGTTGTAACTTGT
Malus domestica genome assembly, chromosome: 9.
OU744550.1:29864392-29864411
GAGAGAACGAGATCTGATCGGAGAAAAAGG29864392CAAACGAAGCTCGAAGCTCTACCCCTTGTGGTTGTCGATGTTGTAAGCCT
Malus domestica genome assembly, chromosome: 17.
OU744558.1:28835834-28835853
GAAGGAGCGAGATCTGATCGGAGAGAAAGG28835834CAAACGAAGCTCGAAGCTCTACCCATATGGTTGTCGATGTTGTAACTTGT
Malus domestica genome assembly, chromosome: 9.
OU744961.1:29552403-29552422
GAGAGAACGAGATCTGATCGGAGAAAAAGG29552403CAAACGAAGCTCGAAGCTCTACCCCTTGTGGTTGTCGATGTTGTAAGCCT
Malus domestica genome assembly, chromosome: 17.
OU744969.1:27888484-27888503
GAAGGAGCGAGATCTGATCGGAGAGAAAGG27888484CAAACGAAGCTCGAAGCTCTACCCATATGGTTGTCGATGTTGTAACTTGT
Malus domestica genome assembly, chromosome: 9.
OU744999.1:29337497-29337516
GAGAGAACGAGATCTGATCGGAGAAAAAGG29337497CAAACGAAGCTCGAAGCTCTACCCCTTGTGGTTGTCGATGTTGTAAGCCT
Malus x robusta genome assembly, chromosome: 8.
OY720332.1:29221352-29221371
GAGAGAACGAGATCTGATCGGAGAAAAAGG29221352CAAACGAAGCTCGAAGCTCTACCCCTTGTGGTTGTCGATGTTGTAAGCCT
Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:33127872-33127891
GAAGGAGCGAGATCTGATCGGAGAGAAAGG33127872CAAACGAAGCTCGAAGCTCTACCCATATTGTTGTCGATGCTGTAAGCCCT
Hypsopygia costalis genome assembly, chromosome: 15.
OW443340.2:6981865-6981884
CACCTGCACGCGGTGCACCCTGCTGACTGA6981865CAAACGAAGCTCGAAGCTCTGGCGAAAAGAGAGGTAGGGAGCGTAATTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/agagcttcgagcttcgtttg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : agagcttcgagcttcgtttg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.094 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=AGAGCTTCGAGCTTCGTTTG&k=0&no_gap=0&offset=0&limit=50
0.118 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=CAAACGAAGCTCGAAGCTCT&k=0&no_gap=0&offset=0&limit=41
0.128 | 0.010 | cgi_end;

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