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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 21:17:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Trifolium pratense DNA, clone:RC0251f.ab1.
DE245049.1:196-215
ATGAGCATTGGTTAGTAACTTATTTTGAGA196AGAGGGTGTGGGAATGACAGCAGATAATAATAAAAAAACAGAGTATAGAA
Medicago truncatula clone mth2-161g6, WORKING DRAFT SEQUENCE, 15 unordered pieces.
AC225457.8:135607-135626
GTACGTAAATTGGTTTAACTTATTTTGAGA135607AGAGGGTGTGGGAATGACAGCATATAATAATAAAGAATAAAGAAAAACAA
Medicago truncatula strain A17 clone mth2-55c8, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC233178.3:127861-127880
GTACGTAAATTGGTTTAACTTATTTTGAGA127861AGAGGGTGTGGGAATGACAGCATATAATAATAAAGAATAAAGAAAAACAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 3H.
OX460049.1:498784405-498784424
CATGGGCTTCTTGCCTCATACATGACTGTG498784405AGAGGGTGTGGGAATGACAGAATGTCCGACCCTAAGAGGGCACATAGTGA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 3H.
OX638772.1:497440078-497440097
CATGGGCTTCTTGCCTCATACATGACTGTG497440078AGAGGGTGTGGGAATGACAGAATGTCCGACCCTAAGAGGGCACATAGTGA
Erodium maritimum genome assembly, chromosome: 3.
OY997590.1:47947893-47947912
TGTAGCTTCAAAAACAGTGTGAGGAAGGAG47947893AGAGGGTGTGGGAATGACAGAGGAAAGAACAATCAAGGTATTGACATTCC
Trifolium repens isolate ACLI19 chromosome 02_Occ.
CP125838.1:2530437-2530456
CTGTTTTTTTTTATTGTTTATTATTATCTG2530437CTGTCATTCCCACACCCTCTTCTCAAAATAAGTTAAACCAATACTCATAA
Trifolium repens isolate ACLI19 chromosome 02_Pall.
CP125839.1:2842686-2842705
TTTTTTTCTTTTATTGTTTATTATTATCTG2842686CTGTCATTCCCACACCCTCTTCTCAAAATAAGTTAAACCAATATAGTACT
Medicago arabica genome assembly, chromosome: 8.
OX326971.1:3613735-3613754
GTTTTTCTCTTTATTCTTTATTATTATATG3613735CTGTCATTCCCACACCCTCTTCTCAAAATAAAACCAATTTACGTACTATT
Trifolium subterraneum genome assembly, chromosome: 2.
OX637462.1:3193810-3193829
CTCTGTTTTTTTATTGTTTATTATTATCTG3193810CTGTCATTCCCACACCCTCTTCTCAAAATAAGTTAAACCAATGCTCATGC
Trifolium fragiferum genome assembly, chromosome: 7.
OX940795.1:38070929-38070948
TCTGTTTTTTTTATTGTTTATTATTATCTG38070929CTGTCATTCCCACACCCTCTTCTCAAAATAAGCTAAGCCAATACTCATAA
Medicago lupulina genome assembly, chromosome: 1.
OY283139.1:3545515-3545534
TGGTTTTTCTTTATTGTTTATTATTATATG3545515CTGTCATTCCCACACCCTCTTCTCAAAATAAGTTAAACCAATTTACGTAC
Alentia gelatinosa genome assembly, chromosome: 1.
OX465579.1:176779597-176779616
GTACAACGTCTCACCTGGGACGGTTCTCAC176779597CTGTCATTCCCACACCCTCTTACCTCATACAATCCCTTAAGGGGCCCCCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/agagggtgtgggaatgacag
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : agagggtgtgggaatgacag | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.405 | 0.396 | search_plus_done; http://172.18.8.135:50400/match?q=AGAGGGTGTGGGAATGACAG&k=0&no_gap=0&offset=0&limit=50
0.497 | 0.092 | search_minus_done; http://172.18.8.135:50400/match?q=CTGTCATTCCCACACCCTCT&k=0&no_gap=0&offset=0&limit=44
0.502 | 0.005 | cgi_end;

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