GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 08:30:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea trifida cultivar NCNSP0306 chromosome 2.
CP025645.1:6689701-6689724
TTCTTGTTTGAACCTCCAAAACACCTCTAC6689701AGCCTTAGCTCCTTCTCTCCCTTGGCAGCACCCAAACAGACAATTCTTGTTTTT
Ipomoea triloba cultivar NCNSP0323 chromosome 2.
CP025661.1:852691-852714
TTCTTGTTTGAACCTCCAAAACACCTCTAC852691AGCCTTAGCTCCTTCTCTCCCTTGGCAGCACCCAAACAGACAATTTCTTGTTTT
Ipomoea nil mRNA, clone: jm43c22, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY923761.1:173-196
AAAAACAAGAATTGTCTGTTGGGGTGCTGC173CAAGGGAGAGAAGGAGCTAAGGCTGTAGAGGTGTTTTGGAGGTTCAAACAAGAA
Ipomoea nil mRNA, clone: jm43e14, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY923801.1:174-197
AAAAACAAGAATTGTCTGTTGGGGTGCTGC174CAAGGGAGAGAAGGAGCTAAGGCTGTAGAGGTGTTTTGGAGGTTCAAACAAGAA
Ipomoea nil mRNA, clone: jm50b07, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY926288.1:173-196
AAAAACAAGAATTGTCTGTTGGGGTGCTGC173CAAGGGAGAGAAGGAGCTAAGGCTGTAGAGGTGTTTTGGAGGTTCAAACAAGAA
Ipomoea nil mRNA, clone: JMFS121E09, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY945318.1:330-353
AAAAACAAGAATTGTCTGTTGGGGTGCTGC330CAAGGGAGAGAAGGAGCTAAGGCTGTAGAGGTGTTTTGGAGGTTCAAACAAGAA
TSA: Ipomoea batatas Contig_44627.Ipbalsr mRNA sequence.
JP149215.1:215-238
AAAAACAAGAATTGTCTGTTTGGGTGCTGC215CAAGGGAGAGAAGGAGCTAAGGCTGTAGAGGTGTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/agccttagctccttctctcccttg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : agccttagctccttctctcccttg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.109 | 0.100 | search_plus_done; http://172.18.8.135:50400/match?q=AGCCTTAGCTCCTTCTCTCCCTTG&k=0&no_gap=0&offset=0&limit=50
0.534 | 0.425 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGGGAGAGAAGGAGCTAAGGCT&k=0&no_gap=0&offset=0&limit=48
0.537 | 0.003 | cgi_end;

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