GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:37:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:5182358-5182381
TTCGACAGCTGATTTTGACGAGCGCGCTTG5182358AGCGATGGATCGTAGTAAGAATTGAAATTGTCCAGACCAAGAACGCCGTCGCCG
KS15026F09 KS15 Capsicum annuum cDNA, mRNA sequence.
GD065838.1:602-625
CGGCGACGGCGTTCTTGGTCTGGACAATTT602CAATTCTTACTACGATCCATCGCTCAAGCGCGCTC
KS19010E05 KS19 Capsicum annuum cDNA, mRNA sequence.
GD088302.1:102-125
CGGCGACGGCGTTCTTGGTCTGGACAATTT102CAATTCTTACTACGATCCATCGCTCAAGCGCGCTCGTCAAAATCAGCTGTCGAA
CS01017G01 Hotpepper under oxidative stress Capsicum annuum cDNA 5', mRNA sequence.
GO345025.1:79-102
CGGCGACGGCGTTCTTGGTCTGGACAATTT79CAATTCTTACTACGATCCATCGCTCAAGCGCGCTCGTCAAAATCAGCTGTCGAA
CS01016B08 Hotpepper under oxidative stress Capsicum annuum cDNA 5', mRNA sequence.
GO345670.1:55-78
CGGCGACGGCGTTCTTGGTCTGGACAATTT55CAATTCTTACTACGATCCATCGCTCAAGCGCGCTCGTCAAAATCAGCTGTCGAA
TSA: Capsicum annuum MGMT_Contig33142 mRNA sequence.
JW083386.1:696-719
CGGCGACGGCGTTCTTGGTCTGGACAATTT696CAATTCTTACTACGATCCATCGCTCAAGCGCGCTCGTCAAAATCAGCTGTCGAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:286918758-286918781
CGGCGACGGCGTTCTTGGTCTGGACAATTT286918758CAATTCTTACTACGATCCATCGCTCAAGCGCGCTCGTCAAAATCAGCTGTCGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/agcgatggatcgtagtaagaattg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : agcgatggatcgtagtaagaattg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.326 | 0.317 | search_plus_done; http://172.18.8.135:50400/match?q=AGCGATGGATCGTAGTAAGAATTG&k=0&no_gap=0&offset=0&limit=50
0.891 | 0.565 | search_minus_done; http://172.18.8.135:50400/match?q=CAATTCTTACTACGATCCATCGCT&k=0&no_gap=0&offset=0&limit=49
0.895 | 0.004 | cgi_end;

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