GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 05:23:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrH066C16R KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis Brassica rapa subsp. pekinensis genomic clone KBrH066C16, genomic survey sequence.
DU979976.1:2-20
A2AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGCCAAATC
BoCig11K10/F BOCIG Brassica oleracea genomic, genomic survey sequence.
FI569201.1:2-20
A2AGCTTTAAATAGACGTGCGAAATGTGAAGATATTAGCCAATGGCAAATC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB063A04, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC232510.1:54629-54647
GGGTTGTGATTTAAGTTTGGGTCGTTGTGA54629AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Brassica rapa subsp. pekinensis clone KBrB085F20, complete sequence.
FP340617.1:74292-74310
GGGTTGTGATTTAAGTTTGGGTCGTTGTGA74292AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69250321-69250339
GGGTTGTGATTTAAGTTTGGGTCGTTGTGA69250321AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:26382644-26382662
AGGTTGTGATGTAAGTTCGGGTCTTTGTGA26382644AGCTTTAAATAGACGTGCGCACAAAGTGTGAAGCTATTAGCCAATGCCA
Brassica napus genome assembly, chromosome: A09.
HG994363.1:53191409-53191427
GGGTTGTGATTTAAGTTTGGGTCGTTGTGA53191409AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41362661-41362679
GGGTTGTGATTTAAGTTTGGGTCGTTGTGA41362661AGCTTTAAATAGACGTGCGAAATGTGAAGATATTAGCCAATGGCAAATC
Brassica rapa genome, scaffold: A09.
LR031568.1:57353056-57353074
GGGTTGTGATTTAAGTTTGGGTCGTTGTGA57353056AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50610997-50611015
GGGTTGTGATTGAAGTTTGGGTCGTTGTGA50610997AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:19494748-19494766
GGGTTGTGATTTAAGTTTCGGTCGTTGTGA19494748AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:67877143-67877161
GGGTTGTGATTTAAGTTTGGGTCGTTGTGA67877143AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Argyrosomus regius genome assembly, chromosome: 24.
OX336905.1:11294329-11294347
TCTACATAAATATTCCCAGACGGGGCAATT11294329CGCACGTCTATTTAAAGCTTCAACGTTATCAAATATGTGTTTCTTTTCC
Blennius ocellaris genome assembly, chromosome: 9.
OY730209.1:14777380-14777398
TCCCCTCGCTTTTTTGGCATTCAGTCATGG14777380CGCACGTCTATTTAAAGCTCGGGAGGGATTTACTTAATAGAATCTACAG
Sequence 15573 from patent US 7420044.
GC577720.1:338-356
GCGCCGCGACGCCGGAACGTGGGCGTACGA338CGCACGTCTATTTAAAGCTCGGCACGCACGCCGTCGTCGCTGTCGCGTT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:313857-313875
GATTTGCCATTGGCTAATATCTTCACATTT313857CGCACGTCTATTTAAAGCTTCACAACGACCCAAACTTAAATCACAACCC
Brassica napus genome assembly, chromosome: A10.
HG994364.1:344035-344053
TGGCATTGGCTAATAGCTTCACACTTTGTG344035CGCACGTCTATTTAAAGCTTCACAAAGACCCGAACTTACATCACAACCT
Brassica rapa genome, scaffold: A10.
LR031577.1:363559-363577
TGGCATTGGCTAATAGCTTCACACTTTGTG363559CGCACGTCTATTTAAAGCTTCACAAAGACCCGAACTTACATCACAACCT
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:364017-364035
TGGCATTGGCTAATAGCTTCACACTTTGTG364017CGCACGTCTATTTAAAGCTTCACAAAGACCCGAACTTACATCACAACCT
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:24538203-24538221
GATTTGCCATTGGCTAAGATCTTCACATTT24538203CGCACGTCTATTTAAAGCTTCACAACGACCGAAACTTAAATCACAACCC
Mythimna lalbum genome assembly, chromosome: 14.
OX439358.1:4401713-4401731
TTACACACTTATATCATAATGTACTATTTA4401713CGCACGTCTATTTAAAGCTACTAAGAAGTAGATATTTCTATTAGAATCA
Phania funesta genome assembly, chromosome: 3.
OZ010654.1:30595964-30595982
ATATGATTGACAGAAAAATTGTAAGCAAAT30595964CGCACGTCTATTTAAAGCTAAAAATACATTCAAAAAAGCAAAACATTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/agctttaaatagacgtgcg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : agctttaaatagacgtgcg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.186 | 0.177 | search_plus_done; http://172.18.8.135:50400/match?q=AGCTTTAAATAGACGTGCG&k=0&no_gap=0&offset=0&limit=50
0.251 | 0.065 | search_minus_done; http://172.18.8.135:50400/match?q=CGCACGTCTATTTAAAGCT&k=0&no_gap=0&offset=0&limit=38
0.258 | 0.007 | cgi_end;

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