GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Capsicum annuum MGMT_Contig4878, mRNA sequence.
JW055122.1:763-786

AATGGGCCTGACAGTAGATCTGAGTTGCTT763AGGAGTGGAGAAAGATACCAAGAATTGTTTCCATGGAGCGGCGGATTTTGGAGC

Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:176613602-176613625

AATGGGCCTGACAGTAGATCTGAGTTGCTT176613602AGGAGTGGAGAAAGATACCAAGAATTGTTTCCATGGAGCGGCGGATTTTGGAGC

KS09022G03 KS09 Capsicum annuum cDNA, mRNA sequence.
CA514313.1:108-131

GCTCCAAAATCCGGCGCTCCATGGAAACAA108TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS09027A05 KS09 Capsicum annuum cDNA, mRNA sequence.
CA514568.1:119-142

GCTCCAAAATCCGCCGCTCCATGGAAACAA119TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS09030F06 KS09 Capsicum annuum cDNA, mRNA sequence.
CA514756.1:106-129

GCTCCAAAATCCGCCGCTCCATGGAAACAA106TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS09041B03 KS09 Capsicum annuum cDNA, mRNA sequence.
CA515384.1:155-178

GCTCCAAAATCCGCCGCTCCATGGAAACAA155TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS09044B07 KS09 Capsicum annuum cDNA, mRNA sequence.
CA515574.1:119-142

GCTCCAAAATCCGCCGCTCCATGGAAACAA119TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS09074C12 KS09 Capsicum annuum cDNA, mRNA sequence.
CA517171.1:64-87

GCTCCAAAATCCGCCGCTCCATGGAAACAA64TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGCCAGGCCCATT

KS12008F04 KS12 Capsicum annuum cDNA, mRNA sequence.
CA522628.1:94-117

GCTCCAAAATCCTCCGCTCCATGGAAACAA94TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS12029F07 KS12 Capsicum annuum cDNA, mRNA sequence.
CA523867.1:130-153

GCTCCAAAATCCTCCGCTCCATGGAAANAA130TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

JH02012B05 JH-201 Capsicum annuum cDNA 5', mRNA sequence.
CO776387.1:7-30

AAACAA7TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS14001F10 KS14 Capsicum annuum cDNA, mRNA sequence.
GD057557.1:67-90

GCTCCAAAATCCGCCGCTCCATGGAAACAA67TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS14015C01 KS14 Capsicum annuum cDNA, mRNA sequence.
GD058803.1:57-80

GCTCCAAAATCCGCCGCTCCATGGAAACAA57TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS14039A12 KS14 Capsicum annuum cDNA, mRNA sequence.
GD061006.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS14054E01 KS14 Capsicum annuum cDNA, mRNA sequence.
GD062436.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS15035A08 KS15 Capsicum annuum cDNA, mRNA sequence.
GD066629.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS16006A04 KS16 Capsicum annuum cDNA, mRNA sequence.
GD069954.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS16006E08 KS16 Capsicum annuum cDNA, mRNA sequence.
GD070006.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS16009B01 KS16 Capsicum annuum cDNA, mRNA sequence.
GD070245.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS16021F04 KS16 Capsicum annuum cDNA, mRNA sequence.
GD071420.1:138-161

GCTCCAAAATCCGCCGCTCCATGGAAACAA138TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS16034H12 KS16 Capsicum annuum cDNA, mRNA sequence.
GD072681.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS16037G07 KS16 Capsicum annuum cDNA, mRNA sequence.
GD072948.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS16051H06 KS16 Capsicum annuum cDNA, mRNA sequence.
GD074281.1:138-161

GCTCCAAAATCCGCCGCTCCATGGAAACAA138TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS16061C09 KS16 Capsicum annuum cDNA, mRNA sequence.
GD075166.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS20044E07 KS20 Capsicum annuum cDNA, mRNA sequence.
GD097392.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS21005K16 KS21 Capsicum annuum cDNA, mRNA sequence.
GD099688.1:92-115

GCTCCAAAATCCGCCGCTCCATGGAAACAA92TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS21022J19 KS21 Capsicum annuum cDNA, mRNA sequence.
GD101230.1:131-154

GCTCCAAAATCCGCCGCTCCATGGAAACAA131TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS21049A16 KS21 Capsicum annuum cDNA, mRNA sequence.
GD103551.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS22014F03 KS22 Capsicum annuum cDNA, mRNA sequence.
GD106332.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS22015D06 KS22 Capsicum annuum cDNA, mRNA sequence.
GD106405.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS22025A04 KS22 Capsicum annuum cDNA, mRNA sequence.
GD107278.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS22045G12 KS22 Capsicum annuum cDNA, mRNA sequence.
GD109225.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS22053E06 KS22 Capsicum annuum cDNA, mRNA sequence.
GD109949.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS22063G07 KS22 Capsicum annuum cDNA, mRNA sequence.
GD110910.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS24031H03 KS24 Capsicum annuum cDNA, mRNA sequence.
GD120813.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25008D13 KS25 Capsicum annuum cDNA, mRNA sequence.
GD124546.1:89-112

GCTCCAAAATCCGCCGCTCCATGGAAACAA89TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25009J18 KS25 Capsicum annuum cDNA, mRNA sequence.
GD124672.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25012D23 KS25 Capsicum annuum cDNA, mRNA sequence.
GD124915.1:137-160

GCTCCAAAATCCGCCGCTCCATGGAAACAA137TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25019N09 KS25 Capsicum annuum cDNA, mRNA sequence.
GD125587.1:71-94

GCTCCAAAATCCGCCGCTCCATGGAAACAA71TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25019P15 KS25 Capsicum annuum cDNA, mRNA sequence.
GD125602.1:71-94

GCTCCAAAATCCGCCGCTCCATGGAAACAA71TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25024P24 KS25 Capsicum annuum cDNA, mRNA sequence.
GD126049.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25029K05 KS25 Capsicum annuum cDNA, mRNA sequence.
GD126465.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25033G19 KS25 Capsicum annuum cDNA, mRNA sequence.
GD126798.1:137-160

GCTCCAAAATCCGCCGCTCCATGGAAACAA137TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25040J08 KS25 Capsicum annuum cDNA, mRNA sequence.
GD127410.1:137-160

GCTCCAAAATCCGCCGCTCCATGGAAACAA137TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25048J20 KS25 Capsicum annuum cDNA, mRNA sequence.
GD128167.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25049E07 KS25 Capsicum annuum cDNA, mRNA sequence.
GD128233.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25057P06 KS25 Capsicum annuum cDNA, mRNA sequence.
GD129050.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25058G13 KS25 Capsicum annuum cDNA, mRNA sequence.
GD129102.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25059G20 KS25 Capsicum annuum cDNA, mRNA sequence.
GD129201.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

KS25059M10 KS25 Capsicum annuum cDNA, mRNA sequence.
GD129232.1:80-103

GCTCCAAAATCCGCCGCTCCATGGAAACAA80TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 6.
CP124726.1:76799355-76799378

GCTCCAAAATCCGCCGCTCCATGGAAACAA76799355TTCTTGGTATCTTTCTCCACTCCTAAGCAACTCAGATCTACTGTCAGGCCCATT

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Debug Info:

0.009 | 0.009 | search_start;
0.124 | 0.116 | search_plus_done; http://172.18.8.135:50400/match?q=AGGAGTGGAGAAAGATACCAAGAA&k=0&no_gap=0&offset=0&limit=50
3.659 | 3.535 | search_minus_done; http://172.18.8.135:50400/match?q=TTCTTGGTATCTTTCTCCACTCCT&k=0&no_gap=0&offset=0&limit=48
3.692 | 0.033 | cgi_end;

Summary:

Results:

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