GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 06:46:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sarcophilus harrisii genome assembly, chromosome: 2.
LR735555.1:243656533-243656550
ATAAGGATTGATATTCTTTGTCTATCATCC243656533AGGTGAATTGGGCTGTATTGTAAATATACTATTGATTATGTAGGCATG
Sarcophilus harrisii genome assembly, chromosome: 2.
LR735555.1:243656743-243656760
ATAAGGATTGATATTCTTTGTCTATCATCC243656743AGGTGAATTGGGCTGTATTGTCTATCAGACAATTTAATCCTCCTATAA
Eptesicus nilssonii genome assembly, chromosome: 3.
OX621282.1:16058153-16058170
GCTGCAGAACAGGGGATAAAATAAAAAGGA16058153AGGTGAATTGGGCTGTATAATTGAACTCTAATGTTATGGTCTGAGATG
Aquila chrysaetos chrysaetos genome assembly, chromosome: 12.
LR606192.1:18667422-18667439
GGTGAAAACCCAAATGAATAGTTCATTTTC18667422AGGTGAATTGGGCTGTATCACAGATGCAACTGATGAGGAACAAGATGA
Accipiter gentilis genome assembly, chromosome: 8.
OV839368.1:25590000-25590017
AGTGAAAACCCAAATGAAGAGTTCGTTTTC25590000AGGTGAATTGGGCTGTATCACAGATGCAACTGATGAGGAACGAGATGA
Haliaeetus albicilla genome assembly, chromosome: 8.
OX381645.1:26137045-26137062
GGTGAAAACCCAAATGAATAGTTCATTTTC26137045AGGTGAATTGGGCTGTATCACAGATGCAACTGATGAGGAACAAGATGA
Labrus mixtus genome assembly, chromosome: 16.
OY757299.1:26012897-26012914
ATAGTGGTGTGGGCTCTAAATCATTTTGAA26012897AGGTGAATTGGGCTGTATAGTGATAACATCACAAAATGTTAATGAACC
Avena insularis genome assembly, chromosome: 3D.
OU342347.1:59440235-59440252
TGTTGGGCTCGTTGGGCCTGGTAGCTGGGT59440235AGGTGAATTGGGCTGTATTCTTTTTTCCTTTTCCTTTTCTATTTTCTG
Pararge aegeria genome assembly, chromosome: 4.
LR990894.1:18887316-18887333
AGTAATACAGGGTAATAACATAAAAGAGGC18887316AGGTGAATTGGGCTGTATAATTCGAATATTTTATATCCCTTTTGTGTC
Furcula furcula genome assembly, chromosome: 7.
OU452249.1:26342595-26342612
GTTTTAATTGGCGTAATATTGCGTAGTAAC26342595AGGTGAATTGGGCTGTATACCCTCCATCATAAAGGGTAGGTTGTAGGG
Pherbina coryleti genome assembly, chromosome: 1.
OX030948.1:120183467-120183484
GTAAATGGTAAAATTTATCGAAATGGGTAC120183467AGGTGAATTGGGCTGTATATGTGTTTCTTGCAGTGCTATAACTTTAAC
Maratus michaelseni genome assembly, chromosome: 3.
OZ007589.1:429927025-429927042
TGGTGTCGAAATAACACCAACGGACGTTCT429927025AGGTGAATTGGGCTGTATTTTTTTAAAAAATAGAATCACATAATAAAA
Labrus bergylta genome assembly, chromosome: 19.
OZ005727.1:18797343-18797360
GGTTCATTAACATTTTGTGACGTTATCACT18797343ATACAGCCCAATTCACCTTTCAAAATGATTTAGAGCGCACACCACTAT
Labrus bergylta genome assembly, chromosome: 23.
OZ005731.1:4728243-4728260
CAGGGATCAACATTTCATTCAGCAAATTCA4728243ATACAGCCCAATTCACCTGTCTGCTTAGGATCAGTACAAATAGCCAGA
MAG: Otus scops adenovirus, complete genome.
ON843719.1:31469-31486
ACATCCACTTTTCGAAGGTAATGACAAGGT31469ATACAGCCCAATTCACCTAGTCTGGCAACAGTATCCAAAAACTGATGC
Branchiostoma floridae cDNA, egg clone:bfeg007d11, 3' end.
BW757701.1:43-60
TTCAAATGCAAGGTAGACTCAATCAGAGTC43ATACAGCCCAATTCACCTGTAGTATGACAGAAATCTTGATTACTTTTA
Branchiostoma floridae cDNA, egg clone:bfeg007d15, 3' end.
BW757705.1:43-60
TTCAAATGCAAGGTAGACTCAATCAGAGTC43ATACAGCCCAATTCACCTGTAGTATGACAGAAATCTTGATTACTTTTA
Branchiostoma floridae cDNA, egg clone:bfeg028c14, 3' end.
BW766599.1:23-40
CTTCAAATACAAGGGTAGACTC23ATACAGCCCAATTCACCTGTAGTATGACAGAAATCTTGATTACTTTTA
Branchiostoma floridae cDNA, gastrula clone:bfga054f05, 3' end.
BW792447.1:33-50
CTTCTTTTCCTTCAAATGCAAGGTAGACTC33ATACAGCCCAATTCACCTGTAGTATGACAGAAATCTTGATTACTTTTA
Lasiommata megera genome assembly, chromosome: 4.
OV743311.1:2091867-2091884
AGACACAAAAGGATATAAAATATTCGAATT2091867ATACAGCCCAATTCACCTGCCTCTTTTGTGTTATTACCCGTATTACTT
Pherbina coryleti genome assembly, chromosome: 3.
OX030950.1:107434878-107434895
GTTAAAGTTCTAGCACTGCAAGAAACACAT107434878ATACAGCCCAATTCACCTATACCAATTCCGATAAATTTTACCATTTAC
Pherbina coryleti genome assembly, chromosome: X.
OX030953.1:12696499-12696516
GTTAAAGTTATAGCACTGCAAGAAACACAT12696499ATACAGCCCAATTCACCTGTACCCATTCCGATAAATTTTACCATTTAC
Elegia similella genome assembly, chromosome: 3.
OX383928.1:18498408-18498425
ACTTCTATGTCCAGAGATGAGAAAATTTCC18498408ATACAGCCCAATTCACCTACACAGATCTTTTTAATTTTAATGTTAACA
Argyra leucocephala genome assembly, chromosome: 3.
OZ012679.1:120009561-120009578
GTTTCTTGTTGTTTTTACTAAAACAACCAA120009561ATACAGCCCAATTCACCTTTTTTTTATAGTTTTATTTATTTATTTTAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/aggtgaattgggctgtat
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : aggtgaattgggctgtat | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.380 | 0.371 | search_plus_done; http://172.18.8.135:50400/match?q=AGGTGAATTGGGCTGTAT&k=0&no_gap=0&offset=0&limit=50
0.606 | 0.226 | search_minus_done; http://172.18.8.135:50400/match?q=ATACAGCCCAATTCACCT&k=0&no_gap=0&offset=0&limit=38
0.614 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).