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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:47:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum EJ_MegaContig_29113, mRNA sequence.
JW135027.1:617-640
TCGACTTTCTGGAAATTTTTGACGCAGGTA617ATAACGCGATCTCTAACTTCATCCTTATCGAGAAAGGATCCTCTTACTTCTTCA
TSA: Capsicum annuum MA_MegaContig_34976, mRNA sequence.
JW160895.1:616-639
TCGACTTTCTGGAAATTTTTGACGCAGGTA616ATAACGCGATCTCTAACTTCATCCTTATCGAGAAAGGATCCTCTTACTTCTTCA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:4151040-4151063
TCGACTTTCTGGAAATTTTTGACGCAGGTA4151040ATAACGCGATCTCTAACTTCATCCTTATCGAGAAAGGATCCTCTTACTTCTTCA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 5.
CP124727.1:4742571-4742594
TCGACTTTCTGGAAATTTTTGACGCAGGTA4742571ATAACGCGATCTCTAACTTCATCCTTATCGAGAAAGGATCCTCTTACTTCTTCA
Petunia axillaris subsp. axillaris EST, clone dr004P0021C15_F.ab1 2007-08-10.
FN014001.1:192-215
AGAGGAAGTAAGGGGATCATTTCTGGATAA192GGATGAAGTTAGAGATCGCGTTATTACCGTCGTTAAAAATTTCCAAAAAGTTGA
KS13008F08 KS13 Capsicum annuum cDNA, mRNA sequence.
GD052774.1:200-223
TGAAGAAGTAAGAGGATCCTTTCTCGATAA200GGATGAAGTTAGAGATCGCGTTATTACCTGCGTCAAAAATTTCCAGAAAGTCGA
RSSH133 The reverse subtracted cDNA library of short-day induced petunia abortion flower buds Petunia x hybrida cDNA, mRNA sequence.
JZ349637.1:109-132
AGAGGAAGTAAGGGGATCATTTCTGGATAA109GGATGAAGTTAGAGATCGCGTTATTACCGTCGTTAAAAATTTTCAGAAAGTTGA
TSA: Petunia axillaris PETAX025679:Contig1 mRNA sequence.
JI344715.1:73-96
AGAGGAAGTAAGGGGATCATTTCTGGATAA73GGATGAAGTTAGAGATCGCGTTATTACCGTCGTTAAAAATTTCCAAAAAGTTGA
TSA: Petunia integrifolia subsp. inflata PETIN080913:Contig1 mRNA sequence.
JI384336.1:46-69
AGAGGAAGTAAGGGGATCATTTCTGGATAA46GGATGAAGTTAGAGATCGCGTTATTACCGTCGTTAAAAATTTTCAGAAAGTTGA
TSA: Capsicum annuum CM_MegaContig_13425 mRNA sequence.
JW101087.1:213-236
TGAAGAAGTAAGAGGATCCTTTCTCGATAA213GGATGAAGTTAGAGATCGCGTTATTACCTGCGTCAAAAATTTCCAGAAAGTCGA
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 12.
CP124708.1:1833197-1833220
AGAGGAAGTAAGAGGATCCTTTCTCGATAA1833197GGATGAAGTTAGAGATCGCGTTATCACTTGCGTCAAAAATTTCCAGAAAGTTGA
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 12.
CP124708.1:1835540-1835563
AAAGGAAGTAAGAGGATCCTTTCTCGATAA1835540GGATGAAGTTAGAGATCGCGTTATCTATTGCGTCAAAAATTTCCAGAAAGTTGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ataacgcgatctctaacttcatcc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ataacgcgatctctaacttcatcc | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.207 | 0.198 | search_plus_done; http://172.18.8.135:50400/match?q=ATAACGCGATCTCTAACTTCATCC&k=0&no_gap=0&offset=0&limit=50
0.917 | 0.711 | search_minus_done; http://172.18.8.135:50400/match?q=GGATGAAGTTAGAGATCGCGTTAT&k=0&no_gap=0&offset=0&limit=46
0.922 | 0.005 | cgi_end;

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