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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:19:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BR114548 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-04H09 5', mRNA sequence.
EX130718.1:535-554
GACAGGGCGGCGTACGGGTCGAGCGGGACC535ATACAGAGGGACCACGACATGAACTCTTATCTGAAGGCGGTTAGGAGTGT
c10_12na_1j.s 12na Brassica napus cDNA clone c10_12na_1j 5, mRNA sequence.
GT081304.1:158-177
GACAGGGCGGCGTACGGGTCGAGCGGGACG158ATACAGAGGGACCACGACATGAACTCTTACCTTAAAGCGGTTAGGAGTGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8323.
FX730090.1:2048-2067
GACAGGGCGGCGTACGGGTCGAGCGGGACC2048ATACAGAGGGACCACGACATGAACTCTTATCTGAAGGCGGTTAGGAGTGT
BOT01-53O21TF BOT01 Brassica oleracea genomic clone BOT01-53O21, genomic survey sequence.
FI720919.1:115-134
GACAGGGCGGCGTACGGGTCGAGCGGGACG115ATACAGAGGGACCACGACATGAACTCTTACCTTAAAGCGGTTAGGAGTGT
BOT01-104H17TF BOT01 Brassica oleracea genomic clone BOT01-104H17, genomic survey sequence.
FI753042.1:444-463
GACAGGGCGGCGTACGGGTCGAGCGGGACG444ATACAGAGGGACCACGACATGAACTCTTACCTTAAAGCGGTTAGGAGTGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092L06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189527.2:41099-41118
GACAGGGCGGCGTACGGGTCGAGCGGGACC41099ATACAGAGGGACCACGACATGAACTCTTATCTGAAGGCGGTTAGGAGTGT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69097741-69097760
GACAGGGCGGCGTACGGGTCGAGCGGGACC69097741ATACAGAGGGACCACGACATGAACTCATATCTGAAAGCGGTTAGGAGTGT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41183701-41183720
GACAGGGCGGCGTACGGGTCGAGCGGGACG41183701ATACAGAGGGACCACGACATGAACTCTTACCTTAAAGCGGTTAGGAGTGT
Brassica rapa genome, scaffold: A09.
LR031568.1:57181915-57181934
GACAGGGCGGCGTACGGGTCGAGCGGGACC57181915ATACAGAGGGACCACGACATGAACTCATATCTGAAAGCGGTTAGGAGTGT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50439510-50439529
GACAGGGCGGCGTACGGGTCGAGCGGGACG50439510ATACAGAGGGACCACGACATGAACTCTTACCTTAAAGCGGTTAGGAGTGT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:67705925-67705944
GACAGGGCGGCGTACGGGTCGAGCGGGACC67705925ATACAGAGGGACCACGACATGAACTCATATCTGAAAGCGGTTAGGAGTGT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_5382.
FX696850.1:352-371
ACACTCCTAACCGCCTTCAGATAAGAGTTC352ATGTCGTGGTCCCTCTGTATGGTCCCGCTCGACCCGTACGCCGCCCTGTC
BONBG58TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONBG58, genomic survey sequence.
BZ488992.1:62-81
ACACTCCTAACCGCTTTAAGGTAAGAGTTC62ATGTCGTGGTCCCTCTGTATCGTCCCGCTCGACCCGTACGCCGCCCTGTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005I07, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC232441.1:25893-25912
ACACTCCTAACCGCCTTCAGATAAGAGTTC25893ATGTCGTGGTCCCTCTGTATGGTCCCGCTCGACCCGTACGCCGCCCTGTC
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:487496-487515
ACACTCCTAACCGCTTTAAGGTAAGAGTTC487496ATGTCGTGGTCCCTCTGTATCGTCCCGCTCGACCCGTACGCCGCCCTGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/atacagagggaccacgacat
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : atacagagggaccacgacat | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.553 | 0.544 | search_plus_done; http://172.18.8.135:50400/match?q=ATACAGAGGGACCACGACAT&k=0&no_gap=0&offset=0&limit=50
0.658 | 0.105 | search_minus_done; http://172.18.8.135:50400/match?q=ATGTCGTGGTCCCTCTGTAT&k=0&no_gap=0&offset=0&limit=39
0.660 | 0.003 | cgi_end;

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