GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 13:17:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:18104904-18104926
TTACCTGGAAGATAAAATGTTGTTAGTCAA18104904ATCTTGCAATCTTCTTGCATAGGATATGATGAGAGAGAGAGAGAGAGAGAGAG
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:18700547-18700569
TTACCTGGAAGATAAAATGTTGTTAGTCAA18700547ATCTTGCAATCTTCTTGCATAGGATATGATGAGAGAGAGAGAGAGAGAGAGAG
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:18024900-18024922
TTACCTGGAAGATAAAATGTTGTTAGTCAA18024900ATCTTGCAATCTTCTTGCATAGGATATGATGAGAGAGAGAGAGAGAGCAGGAT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:18986840-18986862
TTACCTGGAAGATAAAATGTTGTTAGTCAA18986840ATCTTGCAATCTTCTTGCATAGGATATGATGAGAGAGAGAGAGAGAGAGAGAG
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:18532337-18532359
TTACCTGGAAGATAAAATGTTGTTAGTCAA18532337ATCTTGCAATCTTCTTGCATAGGATATGATGAGAGAGAGAGAGAGAGAGAGAG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:28179501-28179523
CTCTCTCTCTCTCTCTCTCTCTCATCATAT28179501CCTATGCAAGAAGATTGCAAGATTTGACTAACAACATTTTATCTTCCAGGTAA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:27516930-27516952
CTCTCTCTCTCTCTCTCTCTCTCATCATAT27516930CCTATGCAAGAAGATTGCAAGATTTGACTAACAACATTTTATCTTCCAGGTAA
Malus domestica genome assembly, chromosome: 5.
OU696681.1:26783180-26783202
CTCTCTCTCTCTCTCTCTCTCTCATCATAT26783180CCTATGCAAGAAGATTGCAAGATTTGACTAACAACATTTTATCTTCCAGGTAA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:27303516-27303538
CTCTCTCTCTCTCTCTCTCTCTCATCATAT27303516CCTATGCAAGAAGATTGCAAGATTTGACTAACAACATTTTATCTTCCAGGTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/atcttgcaatcttcttgcatagg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : atcttgcaatcttcttgcatagg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.099 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=ATCTTGCAATCTTCTTGCATAGG&k=0&no_gap=0&offset=0&limit=50
0.118 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=CCTATGCAAGAAGATTGCAAGAT&k=0&no_gap=0&offset=0&limit=45
0.121 | 0.003 | cgi_end;

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