GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:27:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:19459846-19459865
GACCTCCAAACTCCGCGGGGAAATGGAAAG19459846ATGCCAATGCATGAGACAAAACGGCATTGACAGCCTTCACGTTGTATTCA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:20082574-20082593
GACCTCCAAACTCCGCGGGGAAATGGAAAG20082574ATGCCAATGCATGAGACAAAACGGCATTGACAGCCTTCACGTTGTATTCA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:18842805-18842824
GACCTCCAAACTCCGCGGGGAAATGGCAAG18842805ATGCCAATGCATGAGACAAAACGGCATTGACAGCCTTCACGTTGTATTCA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:19406600-19406619
GACCTCCAAACTCCGCGGGGAAATGGAAAG19406600ATGCCAATGCATGAGACAAAACGGCATTGACAGCCTTCACGTTGTATTCA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:20237154-20237173
GACCTCCAAACTCCGCGGGGAAATGGAAAG20237154ATGCCAATGCATGAGACAAAACGGCATTGACAGCCTTCACGTTGTATTCA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:19257909-19257928
GACCTCCAAACTCCGCGGGGAAATGGAAAG19257909ATGCCAATGCATGAGACAAAACGGCATTAACAGCCTTCACGTTGTATTCA
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:19788347-19788366
GACCTCCAAACTCCGCGGGGAAATGGAAAG19788347ATGCCAATGCATGAGACAAAACGGCATTGACAGCCTTCACGTTGTATTCA
Malus domestica genome assembly, chromosome: 10.
OU696686.1:19848186-19848205
GACCTCCAAACTCCGCGGGGAAATGGAAAG19848186ATGCCAATGCATGAGACAAAACGGCATTGACAGCCTTCACGTTGTATTCA
Malus domestica genome assembly, chromosome: 10.
OU744551.1:19925058-19925077
GACCTCCAAACTCCGCGGGGAAATGGAAAG19925058ATGCCAATGCATGAGACAAAACGGCATTGACAGCCTTCACGTTGTATTCA
Malus domestica genome assembly, chromosome: 10.
OU744962.1:20591436-20591455
GACCTCCAAACTCCGCGGGGAAATGGAAAG20591436ATGCCAATGCATGAGACAAAACGGCATTGACAGCCTTCACGTTGTATTCA
Malus domestica genome assembly, chromosome: 10.
OU745000.1:19595687-19595706
GACCTCCAAACTCCGCGGGGAAATGGAAAG19595687ATGCCAATGCATGAGACAAAACGGCATTGACAGCCTTCACGTTGTATTCA
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:18857032-18857051
GACCTCCAAACTCCGCGGGGAAATGGCAAG18857032ATGCCAATGCATGAGACAAAACGGCATTGACAGCCTTCACGTTGTATTCA
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:20842844-20842863
CTCCTTCAAACTCCGCAGGGAAATGGAAAG20842844ATGCCAATGCATGAGACAAAACGGCAATAACAGCCTTCACGTTGTATTCA
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:12935688-12935707
CTCCTCCAAACTCCGCAGGGAAATGGAATG12935688ATGCCAATGCATGAGACAAAACGGCATTAAGAGCCTTCACATTGTATTCA
Cicer arietinum chromosome Ca2.
CP039332.1:9642803-9642822
ATTTTCATGACTCACCCTTTAGCTTGGAAA9642803TTTGTCTCATGCATTGGCATCATCTTTGTCCCAAATGTACTGGTCTCTCA
Cicer arietinum chromosome Ca2.
CP040767.1:9642799-9642818
ATTTTCATGACTCACCCTTTAGCTTGGAAA9642799TTTGTCTCATGCATTGGCATCATCTTTGTCCCAAATGTACTGGTCTCTCA
Laothoe populi genome assembly, chromosome: 23.
HG992170.1:7521142-7521161
GTAAAATATATTTTAAAGTAAAATATTGAT7521142TTTGTCTCATGCATTGGCATAATATGAGACAGTGAATGAAAAGCCGATTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/atgccaatgcatgagacaaa
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : atgccaatgcatgagacaaa | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.243 | 0.234 | search_plus_done; http://172.18.8.135:50400/match?q=ATGCCAATGCATGAGACAAA&k=0&no_gap=0&offset=0&limit=50
0.334 | 0.091 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGTCTCATGCATTGGCAT&k=0&no_gap=0&offset=0&limit=36
0.336 | 0.002 | cgi_end;

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