GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:04:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

WS02519.B21_C21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_C21 3', mRNA sequence.
DT482202.1:92-115
AACATTCAGAAACTGGAAAAAAAAAAAGGG92ACCATCGAGCGTCCTCAAAACCATGAAGAGTTCACTCCATGACCAATAGAGTTC
WS02521.B21_F13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_F13 3', mRNA sequence.
DT482991.1:76-99
AACATTCAGAAACTGGAAAAAAAAACAGGG76ACCATCGAGCGTCCTCAAAACCATGAAGAGTTCACTCCATGACCAATAGAGTTC
WS02545.B21_N09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02545_N09 3', mRNA sequence.
DT490747.1:550-573
AACATTCAGAAACTGGAAAAAAAAACAGGG550ACCATCGAGCGTCCTCAAAACCATGAAGAGTTCACTCCATGACCAATAGAGTTC
WS02424.B21_C19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02424_C19 3', mRNA sequence.
DT514207.1:605-628
AACATTCAGAAACTGGAAAAAAAAACAGGG605ACCATCGAGCGTCCTCAAAACCATGAAGAGTTCACTCCATGACCAATAGGATTA
WS02448.B21_I03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02448_I03 3', mRNA sequence.
DT520775.1:515-538
AACATTCAGAAACTGGAAAAAAAAACAGGG515ACCATCGAGCGTCCTCAAAACCATGAAGAGTTCACTCCATGACCAATAGGATTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/atggttttgaggacgctcgatggt
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : atggttttgaggacgctcgatggt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.095 | 0.086 | search_plus_done; http://172.18.8.135:50400/match?q=ATGGTTTTGAGGACGCTCGATGGT&k=0&no_gap=0&offset=0&limit=50
0.453 | 0.358 | search_minus_done; http://172.18.8.135:50400/match?q=ACCATCGAGCGTCCTCAAAACCAT&k=0&no_gap=0&offset=0&limit=50
0.457 | 0.004 | cgi_end;

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