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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 13:03:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BNAPO2GH_T3_021_F09_20JUN2007_069 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR454776.1:177-196
ATCATAAAGAGCTCAAATCATCAGCAGAGT177ATGTGCGGTGCACGCGACCACCACCCCCACCTTTCTTCGACTCATCAGCA
KBrB039F07R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB039F07, genomic survey sequence.
DX039773.1:341-360
ATCATAAAGAGCTCAAATCATCAGCAGAGT341ATGTGCGGTGCACGCGACCACCACCCCCACCTTTCTTCGACTCATCAGCA
KBrB054J09F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB054J09, genomic survey sequence.
DX051341.1:341-360
ATCATAAAGAGCTCAAATCATCAGCAGAGT341ATGTGCGGTGCACGCGACCACCACCCCCACCTTTCTTCGACTCATCAGCA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017P15, complete sequence.
AC189246.2:104395-104414
ATCATAAAGAGCTCAAATCATCAGCAGAGT104395ATGTGCGGTGCACGCGACCACCACCCCCACCTTTCTTCGACTCATCAGCA
Brassica napus genome assembly, chromosome: C08.
HG994372.1:40703346-40703365
ATCATAAAGAGCTCAAATCATCAGCAGAGT40703346ATGTGCGGTGCACGCGACCACCACCCCCACCTTTCTTCGACTCATCAGCA
Brassica rapa genome, scaffold: A09.
LR031568.1:56743686-56743705
ATCATAAAGAGCTCAAATCATCAGCAGAGT56743686ATGTGCGGTGCACGCGACCACCACCCCCACCTTTCTTCGACTCATCAGCA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:49979235-49979254
ATCATAAAGAGCTCAAATCATCAGCAGAGT49979235ATGTGCGGTGCACGCGACCACCACCCCCACCTTTCTTCGACTCATCAGCA
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:18337616-18337635
ATCATAAAGAGCTCAAATCATCAGCAGAGT18337616ATGTGCGGTGCACGCGACCACCACCCCCACCTTTCTTCGACTCATCAGCA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:67267753-67267772
ATCATAAAGAGCTCAAATCATCAGCAGAGT67267753ATGTGCGGTGCACGCGACCACCACCCCCACCTTTCTTCGACTCATCAGCA
Brassica oleracea var. viridis mRNA, clone: KALE-075O14, 3' end sequence.
DK544167.1:549-568
TGCTGATGAGTCGAAGAAAGGTGGGGGTGG549TGGTCGCGTGCACCGCACATACTCTGCTGATGATTTGAGCTCTTTATGAT
Brassica oleracea var. viridis mRNA, clone: KALE-139O13, 3' end sequence.
DK568611.1:548-567
TGCTGATGAGTCGAAGAAAGGTGGGGGTGG548TGGTCGCGTGCACCGCACATACTCTGCTGATGATTTGAGCTCTTTATGAT
BNAPO2GH_T3_009_H05_19JUN2007_033 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR453691.1:116-135
TGCTGATGAGTCGAAGAAAGGTGGGGGTGG116TGGTCGCGTGCACCGCACATACTCTGCTGATGATTTGAGCTCTTTATGAT
BOT01-1E21TF BOT01 Brassica oleracea genomic clone BOT01-1E21, genomic survey sequence.
FI678211.1:279-298
TGCTGATGAGTCGAAGAAAGGTGGGGGTGG279TGGTCGCGTGCACCGCACATACTCTGCTGATGATTTGAGCTCTTTATGAT
BOT01-1H19TR BOT01 Brassica oleracea genomic clone BOT01-1H19, genomic survey sequence.
FI678548.1:234-253
TGCTGATGAGTCGAAGAAAGGTGGGGGTGG234TGGTCGCGTGCACCGCACATACTCTGCTGATGATTTGAGCTCTTTATGAT
BOT01-33N5TF BOT01 Brassica oleracea genomic clone BOT01-33N5, genomic survey sequence.
FI701998.1:273-292
TGCTGATGAGTCGAAGAAAGGTGGGGGTGG273TGGTCGCGTGCACCGCACATACTCTGCTGATGATTTGAGCTCTTTATGAT
BoT01-1E21-F BOTO1 Brassica oleracea genomic clone 1E21, genomic survey sequence.
KG699573.1:279-298
TGCTGATGAGTCGAAGAAAGGTGGGGGTGG279TGGTCGCGTGCACCGCACATACTCTGCTGATGATTTGAGCTCTTTATGAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.
AC232437.1:84374-84393
TGCTGATGAGTCGAAGAAAGGTGGGGGTGG84374TGGTCGCGTGCACCGCACATACTCTGCTGATGATTTGAGCTCTTTATGAT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:982976-982995
TGCTGATGAGTCGAAGAAAGGTGGGGGTGG982976TGGTCGCGTGCACCGCACATACTCTGCTGATGATTTGAGCTCTTTATGAT
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:25695334-25695353
TGCTGATGAGTCGAAGAAAGGTGGGGGTGG25695334TGGTCGCGTGCACCGCACATACTCTGCTGATGATTTGAGCTCTTTATGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/atgtgcggtgcacgcgacca
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : atgtgcggtgcacgcgacca | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.307 | 0.298 | search_plus_done; http://172.18.8.135:50400/match?q=ATGTGCGGTGCACGCGACCA&k=0&no_gap=0&offset=0&limit=50
0.678 | 0.371 | search_minus_done; http://172.18.8.135:50400/match?q=TGGTCGCGTGCACCGCACAT&k=0&no_gap=0&offset=0&limit=41
0.685 | 0.007 | cgi_end;

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