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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:59:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Trifolium pratense DNA, clone:RC0310r.ab1.
DE245157.1:516-535
TACTCAACAACTCTTTCCCTCCCGCCACCA516ATTCCCCCAATTTCCATCTCTTTTTCAAGGCACTCTCTCTCTCTCTCTCT
Medicago arabica genome assembly, chromosome: 8.
OX326971.1:35683655-35683674
TCCTCAACCACTCGTTCCCTCCCGCCACCA35683655ATTCCCCCAATTTCCATCTCTTCTTCAAGGCACTCTCTCTCTCTCTCTCT
Vicia faba genome assembly, chromosome: 1L.
OX451736.1:1288225331-1288225350
TACTTAACCACTCTTTCTCTCCCGCCACCA1288225331ATTCCCCCAATTTCCATCTCTTTTTCAAGGTACACTCTTTCTCACTTTAC
Trifolium subterraneum genome assembly, chromosome: 5.
OX637465.1:37983572-37983591
TACTTAACAACTCTTTCCCTCCCGCCACCA37983572ATTCCCCCAATTTCCATCTCTTTTTCAAGGCACTCTCTCTCTCTCTCTCT
Trifolium dubium genome assembly, chromosome: 9.
OX638070.1:24175911-24175930
TACTCAACCACTCTTTCCCTCCCGCCACAA24175911ATTCCCCCAATTTCCATCTCTTTTTCAAGGCACACTATCTCTCCTTACTC
Medicago lupulina genome assembly, chromosome: 1.
OY283139.1:65412014-65412033
TCCTCAACCACTCGTTCCCTCCCGCCACCA65412014ATTCCCCCAATTTCCATCTCTTCTTCAAGGTACTCTCTCTCTCTCTCTCT
Acholoe squamosa genome assembly, chromosome: 15.
OX439049.1:16421286-16421305
GGTCCGCCGGTTTCGTCTGGCTCACCATGT16421286ATTCCCCCAATTTCCATCTCGGGTTGGGGCATGTGCATTCCGGACAAGCA
Neocrepidodera transversa genome assembly, chromosome: 19.
OY725355.1:15519646-15519665
GCCGTGTCTCCTTTTTCCCATGCCTTGGTA15519646ATTCCCCCAATTTCCATCTCCGTGGCTTTGCAGAGTTCCTCCGGCCACTC
Meles meles genome assembly, chromosome: 2.
OV277442.1:195918578-195918597
TGAAGGACTAGGACTATTTCAGAGGCTTGT195918578GAGATGGAAATTGGGGGAATTTCTTATGGGACGTGTATCTACACTCCTAT
Vespertilio murinus genome assembly, chromosome: 13.
OZ004717.1:43474869-43474888
ATCTCTTAGAAAGAGGAACAAATAGTCATT43474869GAGATGGAAATTGGGGGAATAAAGAACAGAATGTTATATAAGCAGCCTAG
Beauveria bassiana strain HN6 chromosome 7.
CP045880.1:2646885-2646904
GAATTTGGAGCGCGAGCTCGTCGTTGAGAA2646885GAGATGGAAATTGGGGGAATTAGTTGGGGCTTATCGATATCGTGGCCGCA
Trifolium repens isolate ACLI19 chromosome 06_0cc.
CP125846.1:27660802-27660821
GTAGAGAGAGTGAGAGTGTGCCTTAAAAAA27660802GAGATGGAAATTGGGGGAATTGGTGGCGGGAGGGAAAGAGGTGTTGAGTA
Trifolium repens isolate ACLI19 chromosome 06_Pall.
CP125847.1:22095180-22095199
GTAGAGAGAGTGAGAGTGTGCCTTAAAAAA22095180GAGATGGAAATTGGGGGAATTGGTAGCGGGAGGGAAAGAGGTGTTGAGTA
Trifolium dubium genome assembly, chromosome: 7.
OX638068.1:19905297-19905316
GAGTAGGGAGAGTGTGTGTGCCTTGAAAAA19905297GAGATGGAAATTGGGGGAATTTGTGGCGGGAGGGAAAGAGTGGTTGAGTA
Trifolium fragiferum genome assembly, chromosome: 1.
OX940789.1:53442353-53442372
GTAGAGAGAGTGTGTGTGTGCCTTGAAAAA53442353GAGATGGAAATTGGGGGAATTGGTGGCGGGAGGGAAACAGTTGTTGAGGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/attcccccaatttccatctc
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : attcccccaatttccatctc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.192 | 0.184 | search_plus_done; http://172.18.8.135:50400/match?q=ATTCCCCCAATTTCCATCTC&k=0&no_gap=0&offset=0&limit=50
0.283 | 0.091 | search_minus_done; http://172.18.8.135:50400/match?q=GAGATGGAAATTGGGGGAAT&k=0&no_gap=0&offset=0&limit=42
0.288 | 0.005 | cgi_end;

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