GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 10:26:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOGGI53TR BOGG Brassica oleracea genomic clone BOGGI53, genomic survey sequence.
BH582108.1:6-25
GAATT6ATTTGTCCGATCCGGAGGTTGCCCGGAAAAACCACTAGTCTCGATAATAC
BONLG06TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONLG06, genomic survey sequence.
BZ461120.1:337-356
ATATGTATTTTATATATTATATGTAAATAT337ATTTGTCCGATCCGGAGGTTGCCCGGAAAAACCACTAGTCTCGATAATAC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:72901568-72901587
ATATGTATTTTATATATTATATGTAAATAT72901568ATTTGTCCGATCCGGAGGTTGCCTGGAAAAACCCCTAGTCTCGATAATAC
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41200077-41200096
ATATGTATTTTATATATTATATGTAAATAT41200077ATTTGTCCGATCCGGAGGTTGCCCGGAAAAACCACTAGTCTCGATAATAC
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:72800248-72800267
ATATGTATTTTATATATTATATGTAAATAT72800248ATTTGTCCGATCCGGAGGTTGCCTGGAAAAACCCCTAGTCTCGATAATAC
BOT01-53O21TR BOT01 Brassica oleracea genomic clone BOT01-53O21, genomic survey sequence.
FI712616.1:476-495
GTATTATCGAGACTAGTGGTTTTTCCGGGC476AACCTCCGGATCGGACAAATATATTTACATATAATATATAAAATACATAT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:471111-471130
GTATTATCGAGACTAGTGGTTTTTCCGGGC471111AACCTCCGGATCGGACAAATATATTTACATATAATATATAAAATACATAT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:842881-842900
GTATTATCGAGACTAGGGGTTTTTCCAGGC842881AACCTCCGGATCGGACAAATATATTTACATATAATATATAAAATACATAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/atttgtccgatccggaggtt
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : atttgtccgatccggaggtt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.141 | 0.132 | search_plus_done; http://172.18.8.135:50400/match?q=ATTTGTCCGATCCGGAGGTT&k=0&no_gap=0&offset=0&limit=50
0.217 | 0.076 | search_minus_done; http://172.18.8.135:50400/match?q=AACCTCCGGATCGGACAAAT&k=0&no_gap=0&offset=0&limit=45
0.219 | 0.002 | cgi_end;

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