GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:55:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS19017G08 KS19 Capsicum annuum cDNA, mRNA sequence.
GD088950.1:82-103
TGTTTTTAGTTGGCAATATGATTCTTGTAC82CAAATGATCGTAAAGGGTGGTTTATTTGTTAATTTAGTCAGTTAATTTCTCT
KS26025G10 KS26 Capsicum annuum cDNA, mRNA sequence.
GD131999.1:345-366
TGTTTTTAGTTGGCAATATGATTCTTGTAC345CAAATGATCGTAAAGGGTGGTTTATTTGTTAATTTAGTCAGTTAATTTCTCT
KS26053E05 KS26 Capsicum annuum cDNA, mRNA sequence.
GD134526.1:474-495
TGTTTTTAGTTGGCAATATGATTCTTGTAC474CAAATGATCGTAAAGGGTGGTTTATTTGTTAATTTAGTCAGTTAATTTCTCT
TSA: Capsicum annuum MGMT_Contig6379, mRNA sequence.
JW056623.1:6468-6489
TGTTTTTAGTTGGCAATATGATTCTTGTAC6468CAAATGATCGTAAAGGGTGGTTTATTTGTTAATTTAGTCAGTTAATTTCTCT
TSA: Capsicum annuum MGMT_Contig20096, mRNA sequence.
JW070340.1:4685-4706
ATGTTTTTAGTTGGCAATATGATTTTGTAC4685CAAATGATCGTAAAGGGTGGTTTATTTGTTAATTTAGTCAGTTAATTTCTCT
TSA: Capsicum annuum CM_MegaContig_27137 mRNA sequence.
JW104668.1:3982-4003
ATGTTTTTAGTTGGCAATATGATTTTGTAC3982CAAATGATCGTAAAGGGTGGTTTATTTGTTAATTTAGTCAGTTAATTTCTCT
Capsicum annuum Takanotsume DNA, chromosome 7, sequence.
AP026702.1:11015961-11015982
TGTTTTTAGTTGGCAATATGATTCTTGTAC11015961CAAATGATCGTAAAGGGTGGTTTATTTGTTAGTTTAGTCAGTTAATTTCTCT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:9906725-9906746
TGTTTTTAGTTGGCAATATGATTCTTGTAC9906725CAAATGATCGTAAAGGGTGGTTTATTTGTTAGTTTAGTCAGTTAATTTCTCT
BJ03023A11 BJ03 Capsicum annuum cDNA 5', mRNA sequence.
CO911748.1:42-63
TTTTTTTTTTTTTTTTTAAACTAACAAATA42AACCACCCTTTACGATCATTTGGTACAAGAATCATATTGCCAACTAAAAACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/caaatgatcgtaaagggtggtt
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : caaatgatcgtaaagggtggtt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.404 | 0.396 | search_plus_done; http://172.18.8.135:50400/match?q=CAAATGATCGTAAAGGGTGGTT&k=0&no_gap=0&offset=0&limit=50
0.456 | 0.052 | search_minus_done; http://172.18.8.135:50400/match?q=AACCACCCTTTACGATCATTTG&k=0&no_gap=0&offset=0&limit=42
0.457 | 0.001 | cgi_end;

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