GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 10:47:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST0045 Habanero leaf cDNA Capsicum chinense cDNA clone Jn 31 similar to Unknown protein, mRNA sequence.
BI480592.1:105-128
CCTTTTGGTCTGATTCAAACTCGAACACTC105CAAGATCCCCTAAACCAGAAAGTAGAGTTCATTTTCAGAAACTTGACACAAAAG
KS12018F09 KS12 Capsicum annuum cDNA, mRNA sequence.
CA523131.1:362-385
CCTTTTGGTCTGATTCAAACTCGAACACTC362CAAGATCCCCTAAACCAGAAAGTAGAGTTCATTTTCAGAAACTTGANACAAAAG
KS21010N23 KS21 Capsicum annuum cDNA, mRNA sequence.
GD100158.1:230-253
CCTTTTGGTCTGATTCAAACTCGAACACTC230CAAGATCCCCTAAACCAGAAAGTAGAGTTCATTTTCAGAAACTTGACACAAAAG
TSA: Physalis peruviana Php00a06458.16411 mRNA sequence.
JO140483.1:727-750
CCTTTTGGTCTGATTCAAACTCCAACACTC727CAAGATCCCCTAAACCAGAAAGTAGAGTACTTCATTTCAAGAAACTTGACACAA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:30713630-30713653
CCTTTTGGTCTGATTCAAACTCGAACACTC30713630CAAGATCCCCTAAACCAGAAAGTAGAGTTCATTTTCAGAAACTTGACACAAAAG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 9.
CP124711.1:11652608-11652631
CCTTTTGGTCTGATTCAAACTCAAACACCC11652608CAAGATCCCCTAAACCAGAAAGTAGAGTTCATTTTCAGAAACTTGACACAAAAG
TSA: Capsicum annuum MGMT_Contig33235 mRNA sequence.
JW083479.1:1111-1134
CTTTTGTGTCAAGTTTCTGAAAATGAACTC1111TACTTTCTGGTTTAGGGGATCTTGGAGTGTTCGAGTTTGAATCAGACCAAAAGG
TSA: Capsicum annuum EJVs_8204, mRNA sequence.
JW141050.1:538-561
CTTTTGTGTCAAGTTTCTGAAAATGAACTC538TACTTTCTGGTTTAGGGGATCTTGGAGTGTTCGAGTTTGAATCAGACCAAAAGG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:261865269-261865292
CTTTTGTGTCAAGTTTCTGAAAATGAACTC261865269TACTTTCTGGTTTAGGGGATCTTGGAGTGTTCGAGTTTGAATCAGACCAAAAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/caagatcccctaaaccagaaagta
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : caagatcccctaaaccagaaagta | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.214 | 0.205 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGATCCCCTAAACCAGAAAGTA&k=0&no_gap=0&offset=0&limit=50
0.272 | 0.058 | search_minus_done; http://172.18.8.135:50400/match?q=TACTTTCTGGTTTAGGGGATCTTG&k=0&no_gap=0&offset=0&limit=44
0.273 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).