GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 15:37:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:25538647-25538670
AAACGTTTTTTGGGGTAATAAATCTACAAG25538647CAAGGAAATCATCAAAGATTCAAGATTGAAGACGGAGAGAAACAGGCGCCATTA
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:25979054-25979077
AAACGTTTTTTGGGGTAATAAATCTACAAG25979054CAAGGAAATCATCAAAGATTCAAGATTGAAGACGGAGAGAAACAGGCGCCATTA
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:28340735-28340758
AAACGTTATTTGGGGTAATAAATCTACAAG28340735CAAGGAAATCATCAAAGATTCAAGATTGAAGACGGAGAGAAACAGGCGCCATTA
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:26939208-26939231
AAACGTTATTTGGGGTAATAAATCTACAAG26939208CAAGGAAATCATCAAAGATTCAAGATTGAAGACGGAGAGAAACAGGCGCCATTA
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:27610306-27610329
AAACGTTATTTGGGGTAATAAATCTACAAG27610306CAAGGAAATCATCAAAGATTCAAGATTGAAGACGGAGAGAAACAGGCGCCATTA
Malus domestica genome assembly, chromosome: 2.
OU696678.1:27389609-27389632
ATAAAAACGTTATTTGGGGTAATCTACAAG27389609CAAGGAAATCATCAAAGATTCAAGATTGAAGACGGAGAGAAACAGGCGCCATTA
Malus domestica genome assembly, chromosome: 2.
OU744543.1:27873518-27873541
AAACGTTATTTGGGGTAATAAATCTACAAG27873518CAAGGAAATCATCAAAGATTCAAGATTGAAGACGGAGAGAAACAGGCGCCATTA
Malus domestica genome assembly, chromosome: 2.
OU744954.1:27414578-27414601
AAACGTTATTTGGGGTAATAAATCTACAAG27414578CAAGGAAATCATCAAAGATTCAAGATTGAAGACGGAGAGAAACAGGCGCCATTA
Malus domestica genome assembly, chromosome: 2.
OU744992.1:28157385-28157408
AAACGTTATTTGGGGTAATAAATCTACAAG28157385CAAGGAAATCATCAAAGATTCAAGATTGAAGACGGAGAGAAACAGGCGCCATTA
Pyrus communis genome assembly, chromosome: 10.
OY757077.1:19976734-19976757
AAACGTTATTTGGGGAATTAAATCTACAAG19976734CAAGGAAATCATCAAAGATTCAAGATTAAAGACGGAGAGAAACAGGCGCCATTA
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:9626721-9626744
TAATGGCGCCTGTTTCTCTCCGTCTTCAAT9626721CTTGAATCTTTGATGATTTCCTTGCTTGTAGATTTATTACCCCAAATAACGTTT
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:10404211-10404234
TAATGGCGCCTGTTTCTCTCCGTCTTCAAT10404211CTTGAATCTTTGATGATTTCCTTGCTTGTAGATTTATTACCCCAAATAACGTTT
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:10106442-10106465
TAATGGCGCCTGTTTCTCTCCGTCTTCAAT10106442CTTGAATCTTTGATGATTTCCTTGCTTGTAGATTTATTACCCCAAATAACGTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/caaggaaatcatcaaagattcaag
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : caaggaaatcatcaaagattcaag | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.366 | 0.356 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGGAAATCATCAAAGATTCAAG&k=0&no_gap=0&offset=0&limit=50
0.497 | 0.132 | search_minus_done; http://172.18.8.135:50400/match?q=CTTGAATCTTTGATGATTTCCTTG&k=0&no_gap=0&offset=0&limit=40
0.499 | 0.002 | cgi_end;

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