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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-13 01:30:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BOT01-112O12TF BOT01 Brassica oleracea genomic clone BOT01-112O12, genomic survey sequence.
FI761284.1:220-239
ACGACCAAAATCTTATCTTATATTTCCTGA220CAAGTCAACAACAGCAAGGTGAAAAGGTATGTTGAGAAACAAGCATCTAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017P15, complete sequence.
AC189246.2:114670-114689
ACGACCAAAATCTTATCTTATATTTCCTGA114670CAAGTCAACAACAGCAAGGTGAAAAGTTATGTTGAGAAACAAGCATCTAA
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:68735941-68735960
ACGACTAAAATCTTATCTTATATTTCCTGA68735941CAAGTCAACAACAGCAAGGTGAAAAGGTATGTTGAGAAACAAGCATCTAA
Brassica napus genome assembly, chromosome: A09.
HG994363.1:52689753-52689772
ACGACTAAAATCTTATCTTATATTTCCTGA52689753CAAGTCAACAACAGCAAGGTGAAAAGGTATGTTGAGAAACAAGCATCTAA
Brassica napus genome assembly, chromosome: C08.
HG994372.1:40713934-40713953
ACGACCAAAATCTTATCTTATATTTCCTGA40713934CAAGTCAACAACAGCAAGGTGAAAAGGTATGTTGAGAAACAAGCATCTAA
Brassica rapa genome, scaffold: A09.
LR031568.1:56756606-56756625
ACGACCAAAATCTTATCTTATATTTCCTGA56756606CAAGTCAACAACAGCAAGGTGAAAAGTTATGTTGAGAAACAAGCATCTAA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:49991881-49991900
ACGACCAAAATCTTATCTTATATTTCCTGA49991881CAAGTCAACAACAGCAAGGTGAAAAGGTATGTTGAGAAACAAGCATCTAA
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:18346813-18346832
AATCTTATCTTATATTTCCCAACACATCAA18346813CAAGTCAACAACAGCAAGGTGAAAAGGTATGTTGAGAAAACAAGCATCTA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:67280673-67280692
ACGACCAAAATCTTATCTTATATTTCCTGA67280673CAAGTCAACAACAGCAAGGTGAAAAGTTATGTTGAGAAACAAGCATCTAA
BOGAO26TF BOGA Brassica oleracea genomic clone BOGAO26, genomic survey sequence.
BH249838.1:456-475
TTAGATGCTTGTTTCTCAACATACCTTTTC456ACCTTGCTGTTGTTGACTTGTCAGGAAATATAAGATAAGATTTTGGTCGT
BoTo91K18/F BOTO1 Brassica oleracea genomic, genomic survey sequence.
FI569234.1:493-512
TTAGATGCTTGTTTCTCAACATACCTTTTC493ACCTTGCTGTTGTTGACTTGTCAGGAAATATAAGATAAGATTTTGGTCGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.
AC232437.1:74099-74118
TTAGATGCTTGTTTCTCAACATAACTTTTC74099ACCTTGCTGTTGTTGACTTGTCAGGAAATATAAGATAAGATTTTGGTCGT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:967556-967575
TTAGATGCTTGTTTCTCAACATACCTTTTC967556ACCTTGCTGTTGTTGACTTGTCAGGAAATATAAGATAAGATTTTGGTCGT
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:25686137-25686156
TAGATGCTTGTTTTCTCAACATACCTTTTC25686137ACCTTGCTGTTGTTGACTTGTTGATGTGTTGGGAAATATAAGATAAGATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/caagtcaacaacagcaaggt
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : caagtcaacaacagcaaggt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.363 | 0.354 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGTCAACAACAGCAAGGT&k=0&no_gap=0&offset=0&limit=50
0.507 | 0.145 | search_minus_done; http://172.18.8.135:50400/match?q=ACCTTGCTGTTGTTGACTTG&k=0&no_gap=0&offset=0&limit=41
0.511 | 0.004 | cgi_end;

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