GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 00:45:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:9626629-9626648
CTTATTTGAAAGAAGAAAAAGGAGACGTTG9626629CAAGTGGCTTCGGATAGTTGGGGACACAAAGTTCGAGAGAGAGGGAGAGA
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:10404091-10404110
CTTATTTGAAAGAAGAAAAAGGAGACGTTG10404091CAAGTGGCTTCGGATAGTTGGGGACAGAAAGTGAGAGAGAGAGAGAGAGA
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:10106350-10106369
CTTATTTGAAAGAAGAAAAAGGAGACGTTG10106350CAAGTGGCTTCGGATAGTTGGGGACACAAAGTTCGAGAGAGAGGGAGAGA
Mdfw2045j11.y1 Mdfw Malus domestica cDNA clone Mdfw2045j11 5', mRNA sequence.
CN996504.1:94-113
TCTCTCTCTCTCTCTCGAACTTTGTGTCCC94CAACTATCCGAAGCCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAG
Mdfrt3054f19.y1 Mdfrt Malus domestica cDNA clone Mdfrt3054f19 5', mRNA sequence.
CO898741.1:1-20
1CAACTATCCGAAGCCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAG
Mdfrt3058b08.y1 Mdfrt Malus domestica cDNA clone Mdfrt3058b08 5', mRNA sequence.
CO902684.1:1-20
1CAACTATCCGAAGCCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAG
Mddb5024e21.y1 Mddb Malus domestica cDNA clone Mddb5024e21 5', mRNA sequence.
CO903877.1:90-109
TCTCTCTCTCTCTCTCGAACTTTGTGTCCC90CAACTATCCGAAGCCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAG
Mdrtp1001N10.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA, mRNA sequence.
DT040217.1:117-136
TCTCTCTCTCTCTCTCTCACTTTCTGTCCC117CAACTATCCGAAGCCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAG
Mdfwf2084P06.g1 Apple_EST_Mdfwf Malus domestica cDNA 5', mRNA sequence.
GO512162.1:121-140
TCTCTCTCTCTCTCTCTCACTTTCTGTCCC121CAACTATCCGAAGCCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAG
Mdfbg8016K08.g1 Apple_EST_Mdfbg Malus hybrid rootstock cDNA 5', mRNA sequence.
GO518205.1:23-42
GAATTCCGTTGCTGTCGGTCCC23CAACTATCCGAAGCCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAG
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:25538745-25538764
TCTCTCTCTCTCTCTCGAACTTTGTGTCCC25538745CAACTATCCGAAGCCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAG
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:28340849-28340868
TCTCTCTCTCTCTCTCTCACTTTCTGTCCC28340849CAACTATCCGAAGCCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAG
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:27610406-27610425
TCTCTCTCTCTCTCTCGAACTTTGTGTCCC27610406CAACTATCCGAAGCCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAG
Malus domestica genome assembly, chromosome: 2.
OU696678.1:27389713-27389732
TCTCTCTCTCTCTCTCGAACTTTGTGTCCC27389713CAACTATCCGAAGCCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAG
Malus domestica genome assembly, chromosome: 2.
OU744543.1:27873628-27873647
TCTCTCTCTCTCTCTCTCACTTTCTGTCCC27873628CAACTATCCGAAGCCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAG
Malus domestica genome assembly, chromosome: 2.
OU744992.1:28157503-28157522
TCTCTCTCTCTCTCTCTCACTTTCTGTCCC28157503CAACTATCCGAAGCCACTTGCAACGTCTCCTTTTTCTTCTTTCAAATAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/caagtggcttcggatagttg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : caagtggcttcggatagttg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGTGGCTTCGGATAGTTG&k=0&no_gap=0&offset=0&limit=50
0.589 | 0.496 | search_minus_done; http://172.18.8.135:50400/match?q=CAACTATCCGAAGCCACTTG&k=0&no_gap=0&offset=0&limit=47
0.598 | 0.009 | cgi_end;

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