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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 19:37:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

000824AALB002882HT (AALB) Royal Gala 150 DAFB fruit cortex Malus domestica cDNA clone AALB002882, mRNA sequence.
CN865853.1:46-65
GGGGAGTGACAACGCCACAAACAATCCGAA46CACAACGCAGTTCGATCACTTCCTTTCTCTCTCTCTCTCTCTCTCTCCCC
010626AAYA005792HT (AAYA) Royal Gala 126 DAFB fruit cortex Malus domestica cDNA clone AAYA005792, mRNA sequence.
CN895737.1:2-21
A2CACAACGCAGTTCGATCACTTCCTTTCTCTCTCTCTCTCTCTCTCTCCCC
030115ABNB002030HT (ABNB) Braeburn cultured fruit cells, boron exposed, phytoremediation Malus domestica cDNA clone ABNB002030, mRNA sequence.
CN914804.1:40-59
GGGGAGTGACAACGCCACAAACAATCCGAA40CACAACGCAGTTCGATCACTTCCTTTCTCTCTCTCTCTCTCCCCCACATA
000321AFBC001234HT (AFBC) Royal Gala pre-opened floral bud Malus domestica cDNA clone AFBC001234, mRNA sequence.
CN929591.1:60-79
GGGGAGTGACAACGCCACAAACAATCCGAA60CACAACGCAGTTCGATCACTTCCTTTCTCTCTCTCTCTCTCTCTCTCCCC
000427AFBC005719HT (AFBC) Royal Gala pre-opened floral bud Malus domestica cDNA clone AFBC005719, mRNA sequence.
CN931450.1:60-79
GGGGAGTGACAACGCCACAAACAATCCGAA60CACAACGCAGTTCGATCACTTCCTTTCTCTCTCTCTCTCTCTCTCTCCCC
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141916.1:10735632-10735651
GGAGAGTGACAACACCACAAACAATCCGAA10735632CACAACGCAGTTCGATCACTTCCTTTCTTTCTCTCCCCCTCTCTCCTCTC
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:10925644-10925663
GGGGAGTGACAACGCCACAAACAATCCGAA10925644CACAACGCAGTTCGATCACTTCCTTTCTCTCTCTCTCTCTCCCCCACATA
Malus x robusta genome assembly, chromosome: 10.
OY720334.1:9746301-9746320
GGAGAGTGACAACACCACAAACAATCCGAA9746301CACAACGCAGTTCGATCACTTCCTTTCTTTCTCTCCCCCTCTCTCCTCTC
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141959.1:26532060-26532079
GAGAGGAGAGAGGGGGAGAGAAAGAAAGGA26532060AGTGATCGAACTGCGTTGTGTTCGGATTGTTTGTGGTGTTGTCACTCTCC
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:25422531-25422550
AAAGAGAGGGAGAGAGAGAGAGAGAAAGGA25422531AGTGATCGAACTGCGTTGTGTTCGGATTGTTTGTGGCGTTGTCACTCCCC
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:25042259-25042278
GGGGAGAGAGAGAGAGAGAGAGAGAAAGGA25042259AGTGATCGAACTGCGTTGTGTTCGGATTGTTTGTGGCGTTGTCACTCCCC
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:25044063-25044082
AGAGAGAGAGAGAGAGAGAGAGAGAGAGGA25044063AGTGATCGAACTGCGTTGTGTTCCGCCAAACGGATTGTTTGTGGTGTTGT
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:24289540-24289559
TGAGGGAGAGAGAGAGAGAGAGAGAAAGGA24289540AGTGATCGAACTGCGTTGTGTTCGGATTGTTTGTGGTGTTGTCACTCCCC
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:24291916-24291935
AGAGAGAGAGAGAGAAAGAGAGAGAGAGGA24291916AGTGATCGAACTGCGTTGTGTTCCGCCAAACGGATTGTTTGTGGTGTTGT
Malus sylvestris genome assembly, chromosome: 7.
OU696509.1:25523440-25523459
GGAGAGAGAGAGAGAGAGAGAGAGAAAGGA25523440AGTGATCGAACTGCGTTGTGTTCGGATTGTTTGTGGCGTTGTCACTCCCC
Malus domestica genome assembly, chromosome: 7.
OU696683.1:24763591-24763610
AAAGAGAGGGAGAGAGAGAGAGAGAAAGGA24763591AGTGATCGAACTGCGTTGTGTTCGGATTGTTTGTGGCGTTGTCACTCCCC
Malus domestica genome assembly, chromosome: 7.
OU696683.1:24765352-24765371
AGAGAGAGAGAGAGAGAGAGAGAGAGAGGA24765352AGTGATCGAACTGCGTTGTGTTCCGCCAAACGGATTGTTTGTGGTGTTGT
Malus domestica genome assembly, chromosome: 7.
OU744548.1:25954968-25954987
GGGGAGAGAGAGAGAGAGAGAGAGAAAGGA25954968AGTGATCGAACTGCGTTGTGTTCGGATTGTTTGTGGCGTTGTCACTCCCC
Malus domestica genome assembly, chromosome: 7.
OU744548.1:25956764-25956783
AGAGAGAGAGAGAGAGAGAGAGAGAGAGGA25956764AGTGATCGAACTGCGTTGTGTTCCGCCAAACGGATTGTTTGTGGTGTTGT
Malus domestica genome assembly, chromosome: 7.
OU744959.1:24806854-24806873
GGGGAGAGAGAGAGAGAGAGAGAGAAAGGA24806854AGTGATCGAACTGCGTTGTGTTCGGATTGTTTGTGGCGTTGTCACTCCCC
Malus domestica genome assembly, chromosome: 7.
OU744997.1:25061478-25061497
GGGGAGAGAGAGAGAGAGAGAGAGAAAGGA25061478AGTGATCGAACTGCGTTGTGTTCGGATTGTTTGTGGCGTTGTCACTCCCC
Malus domestica genome assembly, chromosome: 7.
OU744997.1:25063282-25063301
AGAGAGAGAGAGAGAGAGAGAGAGAGAGGA25063282AGTGATCGAACTGCGTTGTGTTCCGCCAAACGGATTGTTTGTGGTGTTGT
Crataegus laevigata genome assembly, chromosome: 10.
OY756947.1:28019260-28019279
AGAGAGAGGGAGAGAGAGAGAGAGAATGGA28019260AGTGATCGAACTGCGTTGTGTTCCGCCAAACGGATTGTTTGTGGTGTGTC
Pyrus communis genome assembly, chromosome: 5.
OY757072.1:21693668-21693687
GAGAGGGCAGAGGGAGAGAGAGAGAGAGGA21693668AGTGATCGAACTGCGTTGTGTTCCGCCAAACGGATTGTTTGTGGTGTTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/cacaacgcagttcgatcact
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : cacaacgcagttcgatcact | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.272 | 0.263 | search_plus_done; http://172.18.8.135:50400/match?q=CACAACGCAGTTCGATCACT&k=0&no_gap=0&offset=0&limit=50
0.296 | 0.024 | search_minus_done; http://172.18.8.135:50400/match?q=AGTGATCGAACTGCGTTGTG&k=0&no_gap=0&offset=0&limit=42
0.307 | 0.011 | cgi_end;

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