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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-01-06 14:36:04, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 13.
CP141939.1:4492821-4492844
CTCTCTCCTCTCTCCTCTTTCCACCACCCC4492821CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141982.1:37296614-37296637
CTCTCTCCTCTCTCCTCTTTCCACCACCCC37296614CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143370.1:4584507-4584530
CTCTCTCCTCTCTCCTCTTTCCACCACCCC4584507CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus ioensis cultivar PI590015 chromosome 13.
CP154736.1:4485538-4485561
CTCTCCCTCCTCTCTCCACTCTCCACTCTC4485538CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus coronaria cultivar PI590014 chromosome 13.
CP154770.1:4573735-4573758
CTCTCCCTCCTCTCTCCACTCTCCACTCTC4573735CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus coronaria cultivar PI590014 chromosome 13.
CP154787.1:4578550-4578573
CTCTCCCTCCTCTCTCCACTCTCCACTCTC4578550CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus domestica cultivar WA 38 chromosome 13B.
CP165696.1:4584147-4584170
CTCTCTCCTCTCTCCTCTTTCCACCACCCC4584147CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus domestica cultivar WA 38 chromosome 13A.
CP165713.1:4507398-4507421
CTCTCTCCTCTCTCCTCTTTCCACCACCCC4507398CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus domestica cultivar Golden Delicious chromosome 13.
CP168777.1:4535880-4535903
CTCTCTCCTCTCTCCTCTTTCCACCACCCC4535880CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus domestica cultivar Golden Delicious chromosome 13.
CP168794.1:4629721-4629744
CTCTCTCCTCTCTCCTCTTTCCACCACCCC4629721CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus sylvestris genome assembly, chromosome: 13.
OU696515.1:4524591-4524614
CTCTCTCCTCTCTCCTCTTTCCACCACCCC4524591CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus domestica genome assembly, chromosome: 13.
OU696689.1:4617033-4617056
CTCTCTCCTCTCTCCTCTTTCCACCACCCC4617033CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus domestica genome assembly, chromosome: 13.
OU744554.1:4511720-4511743
CTCTCTCCTCTCTCCTCTTTCCACCACCCC4511720CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus domestica genome assembly, chromosome: 13.
OU744965.1:4533416-4533439
CTCTCTCCTCTCTCCTCTTTCCACCACCCC4533416CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus domestica genome assembly, chromosome: 13.
OU745003.1:4402251-4402274
CTCTCTCCTCTCTCCTCTTTCCACCACCCC4402251CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus x robusta genome assembly, chromosome: 9.
OY720333.1:4535863-4535886
CTCTCTCCTCTCTCCTCTTTCCACCACCCC4535863CACACAGTCAGTGAGACTGATGAGGTGAGAGGCCGTGTAGGTTTCTGAACACTA
Malus domestica cultivar Red Fuji chromosome 13.
CP147805.1:40550920-40550943
TAGTGTTCAGAAACCTACACGGCCTCTCAC40550920CTCATCAGTCTCACTGACTGTGTGGGGGTGGTGGAAAGAGGAGAGAGGAGAGAG
Malus domestica cultivar Red Fuji chromosome 13.
CP147814.1:39302197-39302220
TAGTGTTCAGAAACCTACACGGCCTCTCAC39302197CTCATCAGTCTCACTGACTGTGTGGGGGTGGTGGAAAGAGGAGAGAGGAGAGAG
Malus ioensis cultivar PI590015 chromosome 13.
CP154753.1:38271031-38271054
TAGTGTTCAGAAACCTACACGGCCTCTCAC38271031CTCATCAGTCTCACTGACTGTGTGGAGAGTGGAGAGTGGAGAGAGGAGAGAGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/cacacagtcagtgagactgatgag
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : cacacagtcagtgagactgatgag | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.241 | 0.232 | search_plus_done; http://172.18.8.135:50800/match?q=CACACAGTCAGTGAGACTGATGAG&k=0&no_gap=0&offset=0&limit=50
0.416 | 0.175 | search_minus_done; http://172.18.8.135:50800/match?q=CTCATCAGTCTCACTGACTGTGTG&k=0&no_gap=0&offset=0&limit=34
0.418 | 0.002 | cgi_end;

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