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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:17:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Capricornis sumatraensis isolate serow.1 chromosome X.
CP135630.1:5233915-5233934
AGTGTCAGACACGACTGAAATGACTTAGTA5233915CACATGCATGAAAAGCATATGTGGCTGAATCAAGGTTAGCAGGATGAAAC
Rangifer tarandus platyrhyncus genome assembly, chromosome: X.
OX460343.1:94483927-94483946
AGTGTTGGACACGACTGAAATGACTTAGTA94483927CACATGCATGAAAAGCATATGTGGCTGAATCAAGATTAGCAGGATGAAAC
Vespertilio murinus genome assembly, chromosome: 6.
OZ004709.1:131258484-131258503
ATTTATAGCCTGGAATTTGCACTTCATCTT131258484CACATGCATGAAAAGCATATTCTTTTTAAAAATATATATATATTATTGAT
Mobula hypostoma genome assembly, chromosome: 3.
OY992594.1:118686375-118686394
TATATTTTCATCAATGAAAACAAGATTCAG118686375CACATGCATGAAAAGCATATGCAATTATGATAAATGCAGACCACTAAACT
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:22350923-22350942
GCTTAGTATGCCACCTACTACATGCAGATG22350923CACATGCATGAAAAGCATATGATCATGTGCGCGCACACACGTGTGTGTGT
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:23336510-23336529
GCTTAGTATGCCACCTACTACATGCAGATG23336510CACATGCATGAAAAGCATATGATCATGCGCGCGCACACACACGTGTGTGT
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:22153338-22153357
GCTTAGTATGCCACCTACTACATGCAGATG22153338CACATGCATGAAAAGCATATGATCATGCGCGCGCGCACACGTGTGTGTGT
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141983.1:23410800-23410819
GCTTAGTATGCCACCTACTACATGCAGATG23410800CACATGCATGAAAAGCATATGATCATGCACGCGCACACACACACACGTGT
Geum urbanum genome assembly, chromosome: 6.
OX327002.1:67911099-67911118
ATTATGCATCTCAATGAGCAACTCTTCTTT67911099CACATGCATGAAAAGCATATCCAGAGATTTAATGATGATTCTAATCTAGA
Geum urbanum genome assembly, chromosome: 11.
OX327007.1:58036561-58036580
ATTATGCATCTCATTGAGCAACTCTTCTTT58036561CACATGCATGAAAAGCATATCCAGAGATCTAATGATTCTAATCTAGACAT
Malus x robusta genome assembly, chromosome: 15.
OY720339.1:22761695-22761714
GCTTAGTATGCCACCTACTACATGCAGATG22761695CACATGCATGAAAAGCATATGATCATGCGCGCGCACACACACGTGTGTGT
Cervus elaphus genome assembly, chromosome: X.
OU343077.1:86136831-86136850
GTTTCATCCTGCTAATCTTGATTCAGCCAC86136831ATATGCTTTTCATGCATGTGTACTAAGTCATTTCTGTCGTGTCCGACACT
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:8645756-8645775
ACACACACGTGTGCGCGCGCGCGCATGATC8645756ATATGCTTTTCATGCATGTGCATCTGCATGTAGTAGGTGGCATACTAAGC
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:7705793-7705812
ACGCGCGCGCGCGTGCGTGTGCACATGATC7705793ATATGCTTTTCATGCATGTGCATCTGCATGTAGTAGGTGGCATACCAAGC
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:8098619-8098638
ACACACACACACGTGTGCGCGCGCATGATT8098619ATATGCTTTTCATGCATGTGCATCTGCATGTGGTAGGTGGCATACTAAGC
Malus domestica genome assembly, chromosome: 14.
OU696690.1:8377661-8377680
ACACACACGTGTGCGCGCGCGCGCATGATC8377661ATATGCTTTTCATGCATGTGCATCTGCATGTAGTAGGTGGCATACTAAGC
Malus domestica genome assembly, chromosome: 14.
OU744555.1:8650116-8650135
ACACACACACACGTGTGCGCGCGCATGATT8650116ATATGCTTTTCATGCATGTGCATCTGCATGTGGTAGGTGGCATACTAAGC
Malus domestica genome assembly, chromosome: 14.
OU744966.1:8928100-8928119
ACACACACGTGTGTGTGCGCGCGCATGATC8928100ATATGCTTTTCATGCATGTGCATCTGCATGTAGTAGGTGGCATACTAAGC
Malus domestica genome assembly, chromosome: 14.
OU745004.1:8557339-8557358
ACACACACGTGTGCGCGCGCGCGCATGATC8557339ATATGCTTTTCATGCATGTGCATCTGCATGTAGTAGGTGGCATACTAAGC
Pyrus communis genome assembly, chromosome: 13.
OY757080.1:6190611-6190630
GCGCGCACGCGTGCGTGAGCGCGCATGATC6190611ATATGCTTTTCATGCATGTGCATCTGCATGTAGTAGGTGGCATAGTAAGC
Clusia tigrina genome assembly, chromosome: 2.
OV050031.1:217435911-217435930
AGGAACCTAACATGATTCACGTTGCTTTAG217435911ATATGCTTTTCATGCATGTGATAGGAGGCTCTTATAGGAAATATAATACC
Ophion slaviceki genome assembly, chromosome: 3.
OX101785.1:21768094-21768113
GTAACAATCATTGGTAGTTTTACAATAATT21768094ATATGCTTTTCATGCATGTGCATAAAATACACAAAATTATTGTAAAACTG
Diarsia dahlii genome assembly, chromosome: 25.
OX459215.1:9126650-9126669
TATTGTACTAGCATCCGTTTTTTTAAATGT9126650ATATGCTTTTCATGCATGTGTTCTGGTGTATACGTATGCGTAGATTATGT
Thysanoteuthis rhombus genome assembly, chromosome: 22.
OY735219.1:18010705-18010724
ACGCCTCTTTTTCTAAGGAAAACTCTACCC18010705ATATGCTTTTCATGCATGTGCTGATATAATTTCAAATATATATATATATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/cacatgcatgaaaagcatat
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : cacatgcatgaaaagcatat | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.116 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=CACATGCATGAAAAGCATAT&k=0&no_gap=0&offset=0&limit=50
0.172 | 0.056 | search_minus_done; http://172.18.8.135:50400/match?q=ATATGCTTTTCATGCATGTG&k=0&no_gap=0&offset=0&limit=39
0.181 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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