GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 04:34:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea nil mRNA, clone: JMFN041N02, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY935015.1:165-188
CACTCTGCGGCGTTGGCTTCACCACCACCA165CACCTCCCTTCACTCTCTCCACTCCATTCTCTTCGTTCCTCCCCATCTCTCTCT
Ipomoea nil cDNA clone:jmsf13h07, 5' end.
CJ738237.1:150-173
AGAGAGAGATGGGGAGGAACGAAGAGAATG150GAGTGGAGAGAGTGAAGGGAGGTGTGGTGGTGGTGAA
Ipomoea nil cDNA clone:jmsf36o09, 5' end.
CJ747277.1:97-120
AGAGAGAGATGGGGAGGAACGAAGAGAATG97GAGTGGAGAGAGTGAAGGGAGGTGTGGTGGTGGTGAACCCNACNCCGCAGAGTG
Ipomoea nil cDNA clone:jmsf52o22, 5' end.
CJ751581.1:143-166
AGAGAGAGATGGGGAGGAACGAAGAGAATG143GAGTGGAGAGAGTGAAGGGAGGTGTGGTGGTGGTGAAGCCNACGCCNCAGAGTG
Ipomoea nil mRNA, clone: jm51c09, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY926674.1:38-61
AGAGAGAGATGGGGAGGAACGAAGAGAATG38GAGTGGAGAGAGTGAAGGGAGGTGTGGTGGTGGTGAAGCCAACGCCGCAGAGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/cacctcccttcactctctccactc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : cacctcccttcactctctccactc | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.203 | 0.194 | search_plus_done; http://172.18.8.135:50400/match?q=CACCTCCCTTCACTCTCTCCACTC&k=0&no_gap=0&offset=0&limit=50
0.426 | 0.224 | search_minus_done; http://172.18.8.135:50400/match?q=GAGTGGAGAGAGTGAAGGGAGGTG&k=0&no_gap=0&offset=0&limit=49
0.429 | 0.003 | cgi_end;

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